Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1362
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99... 111 9e-25
09_05_0013 + 20067115-20067183,20067585-20067691,20067905-200680... 104 8e-23
08_02_1460 + 27295201-27295269,27295968-27296074,27296252-272963... 100 1e-21
05_04_0119 - 18169729-18169887,18170515-18170653,18170728-181709... 32 0.66
07_03_1340 + 25887135-25887372,25887676-25887798,25888388-258885... 29 6.2
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495 28 8.1
>03_01_0128 +
995103-995174,996500-996606,996909-997041,997127-997270,
997589-997747,997865-997938,998024-998099,998476-998531,
998651-998738,998824-998964,999057-999206,999320-999476,
1001183-1001773,1002673-1003532
Length = 935
Score = 111 bits (266), Expect = 9e-25
Identities = 50/83 (60%), Positives = 60/83 (72%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGM 182
+M H YDFYKPDL+SE+P VDGKLS CYL ALD+CYN+F KK K + + D
Sbjct: 188 HMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYNVFCKKYEKLEGKQFSIHDADYF 247
Query: 183 LFHSPYCKLVQKSLARVCFNDFL 251
+FHSPY KLVQKS AR+ +NDFL
Sbjct: 248 VFHSPYNKLVQKSFARLYYNDFL 270
Score = 54.4 bits (125), Expect = 1e-07
Identities = 28/76 (36%), Positives = 44/76 (57%)
Frame = +2
Query: 290 LSEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGLVSYL 469
L +S E++Y RE+EKA + L++ K +P I + VGNMYT SLY L S +
Sbjct: 284 LEPYSGLSSEESYQSRELEKASQQVAKHLYDSKVQPITLIPKQVGNMYTASLYAALASVM 343
Query: 470 ISKSPDQLIGKKFLCF 517
+K+ + L G++ + F
Sbjct: 344 HNKN-ETLAGQRIVMF 358
Score = 54.4 bits (125), Expect = 1e-07
Identities = 30/99 (30%), Positives = 48/99 (48%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + +FSYGSGL STM+S + + + I+ + + L+ R V P KF +
Sbjct: 353 QRIVMFSYGSGLTSTMFSFKI--NEGQHPFILSNIAGILDVSKKLESRHVVAPEKFVAAL 410
Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTY 795
+ Y + + + +L PGTYYL +D RR Y
Sbjct: 411 KLMEHRYGAKDFTTSQDTSLLAPGTYYLTHVDSMYRRFY 449
>09_05_0013 +
20067115-20067183,20067585-20067691,20067905-20068037,
20068163-20068306,20068415-20068573,20068710-20068783,
20068907-20068982,20069100-20069155,20069346-20069433,
20069508-20069648,20069737-20069886,20070165-20070398
Length = 476
Score = 104 bits (250), Expect = 8e-23
Identities = 48/82 (58%), Positives = 56/82 (68%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGM 182
+M H YDFYKPDL+SE+P VDGKLS CYL ALD+CY F KK K + D
Sbjct: 187 HMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQFCKKYEKLAGKQFSISDADYF 246
Query: 183 LFHSPYCKLVQKSLARVCFNDF 248
+FHSPY KLVQKS AR+ +NDF
Sbjct: 247 VFHSPYNKLVQKSFARLYYNDF 268
Score = 67.3 bits (157), Expect = 1e-11
Identities = 40/126 (31%), Positives = 67/126 (53%)
Frame = +1
Query: 427 YVHTIIIRRSCVLFDKQISRSVNWEEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLIS 606
Y ++ + VL++K S ++ + + +FSYGSGL STM+S+ + + S L + S
Sbjct: 330 YTASLYAALASVLYNKHAS--LDDQRIVMFSYGSGLTSTMFSLKLNNGQDPFS-LSNIAS 386
Query: 607 SLHETVALLDKRQSVEPSKFSDIMDVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRR 786
L+ T L + R P KF + + + Y + +E +L PGT+YL ++D R
Sbjct: 387 VLNATEKL-ESRHMTLPEKFVETLKLMEHRYGAKDFETCKDTSLLPPGTFYLTRVDSMYR 445
Query: 787 RTYDRK 804
R Y+RK
Sbjct: 446 RFYERK 451
Score = 53.6 bits (123), Expect = 2e-07
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +2
Query: 290 LSEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGLVSYL 469
L FSN E++Y R++EKA + L++ K +PS + + +GNMYT SLY L S L
Sbjct: 283 LQPFSNLTGEESYQSRDLEKASQQVAKPLYDIKVQPSTLLPKQIGNMYTASLYAALASVL 342
Query: 470 ISK 478
+K
Sbjct: 343 YNK 345
>08_02_1460 +
27295201-27295269,27295968-27296074,27296252-27296384,
27296621-27296714,27296828-27297030,27297167-27297240,
27297331-27297406,27297530-27297585,27297939-27298026,
27298115-27298255,27298338-27298487,27299015-27299221
Length = 465
Score = 100 bits (240), Expect = 1e-21
Identities = 46/83 (55%), Positives = 56/83 (67%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGM 182
+M H YDFYKPDL+SE+P VDGKLS CYL ALD+CY + K K + +
Sbjct: 185 HMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQYCTKYEKIVGEQFSISDAEYC 244
Query: 183 LFHSPYCKLVQKSLARVCFNDFL 251
+FHSPY KLVQKS AR+ FNDF+
Sbjct: 245 VFHSPYNKLVQKSFARLYFNDFM 267
Score = 72.1 bits (169), Expect = 5e-13
Identities = 41/126 (32%), Positives = 67/126 (53%)
Frame = +1
Query: 427 YVHTIIIRRSCVLFDKQISRSVNWEEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLIS 606
Y ++ + V+++K S++ + + +FSYGSGL STM+S+ + HD L + S
Sbjct: 328 YTASLYAALASVIYNKH--DSLDGQRILMFSYGSGLTSTMFSLRL-HDGQHPFSLMNIAS 384
Query: 607 SLHETVALLDKRQSVEPSKFSDIMDVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRR 786
L T L + R P KF + + + Y + +E + +L PGT+YL K+D R
Sbjct: 385 VLDVTTKL-ESRHVTSPEKFIETLKLMEHRYGAKDFETSKDTSLLPPGTFYLTKVDSMYR 443
Query: 787 RTYDRK 804
R YD+K
Sbjct: 444 RFYDKK 449
Score = 57.6 bits (133), Expect = 1e-08
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = +2
Query: 290 LSEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGLVSYL 469
L F+N E++Y R++EKA + L++ K +PS + + +GNMYT SLY L S +
Sbjct: 281 LQPFANLTSEESYQSRDLEKASQQVAKHLYDIKVQPSTLLPKQIGNMYTASLYAALASVI 340
Query: 470 ISKSPDQLIGKKFLCF 517
+K D L G++ L F
Sbjct: 341 YNKH-DSLDGQRILMF 355
>05_04_0119 -
18169729-18169887,18170515-18170653,18170728-18170974,
18171585-18171968,18172251-18172540,18172884-18173295,
18173409-18173420,18173943-18174135
Length = 611
Score = 31.9 bits (69), Expect = 0.66
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 466 FDKQISRSVNWEEVSLFSYGSGLASTMYSINV-CHDMSTGSKLEKLISSLHE 618
F ++S S + +S+ YG + Y+ + CHD S S+L+KL S HE
Sbjct: 73 FTNRVSLSYRTKPISVPDYGVDVCPLKYNEYIPCHDASYISQLKKLDRSRHE 124
>07_03_1340 +
25887135-25887372,25887676-25887798,25888388-25888527,
25888680-25888817,25888898-25889119
Length = 286
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +1
Query: 769 IDDQRRRTYDRKH 807
IDDQRR++YDR+H
Sbjct: 149 IDDQRRKSYDREH 161
>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
Length = 728
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 302 SNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMY 433
S+ + DT FD E EKA + SLS EE S N G Y
Sbjct: 575 SSDFMRDTMFDFEDEKANILKSLSKLEETLGMSSTDRHNFGGTY 618
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,830,860
Number of Sequences: 37544
Number of extensions: 404210
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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