Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1362
(846 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 2e-24
SB_25876| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 4e-21
SB_59383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_40787| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_7068| Best HMM Match : ResIII (HMM E-Value=0.29) 29 3.6
SB_3085| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_22732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-23) 29 3.6
SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_5331| Best HMM Match : Fork_head (HMM E-Value=0) 29 6.3
SB_10516| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1608
Score = 110 bits (264), Expect = 2e-24
Identities = 48/94 (51%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTD-PNFKGLLSLDG 179
+M HAYDFYKPD++SE+P VDG+LSI+CY NA+D CY F++K K + + GL +D
Sbjct: 142 FMQHAYDFYKPDMTSEYPVVDGRLSIKCYFNAVDQCYKAFTEKTAKVENKDSVGLEDIDY 201
Query: 180 MLFHSPYCKLVQKSLARVCFNDFLNYLLRNVRNN 281
+ FH+P+CK+VQKSLAR+ DFL + R +
Sbjct: 202 VAFHTPFCKIVQKSLARMYLADFLKGYRQGTRKD 235
Score = 94.3 bits (224), Expect = 1e-19
Identities = 44/99 (44%), Positives = 63/99 (63%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + +FSYGSGLAS M+SI V + S S L L+ SL + + L R V PS F +
Sbjct: 314 KRIGMFSYGSGLASAMFSIRVSPNTSPSSPLTNLVGSLSDVPSRLACRSEVSPSDFVATL 373
Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTY 795
++R K +H++ Y P GS+ +LFPGTYYL +DD+ RR +
Sbjct: 374 ELREKTHHASSYVPKGSIHMLFPGTYYLESVDDKFRRNH 412
Score = 68.9 bits (161), Expect = 5e-12
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Frame = +2
Query: 290 LSEFSNHKLEDTYFD----REVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGL 457
L + + KL +T+ D +E+EKA + S +F+ K +P H+A++VGNMYTPSLYG L
Sbjct: 240 LHPYRDIKLSETFQDENLAKEIEKASVKASQGVFDAKARPCTHVAQDVGNMYTPSLYGSL 299
Query: 458 VSYLISKSPDQLIGKKFLCF 517
VS L S QL GK+ F
Sbjct: 300 VSLLNSVPASQLAGKRIGMF 319
>SB_25876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 99.1 bits (236), Expect = 4e-21
Identities = 47/97 (48%), Positives = 63/97 (64%)
Frame = +1
Query: 511 LFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIMDVRT 690
++SYGSGLAS M+SI V ST S L L+ SL + + L R V PS F +++R
Sbjct: 1 MYSYGSGLASAMFSIRVSPKSSTSSPLTNLVGSLSDVPSRLACRSEVSPSDFVATLELRE 60
Query: 691 KNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTYDR 801
K +H++ Y P GS+D+LFPGTYYL +DD+ RR Y R
Sbjct: 61 KTHHASSYVPKGSIDMLFPGTYYLESVDDKFRRKYGR 97
>SB_59383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 565 DIHLWNTLSMPILNRMKTKKLL 500
D+H W TL+ +LN KTK +L
Sbjct: 587 DVHKWATLNRMVLNTKKTKSML 608
>SB_40787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 565 DIHLWNTLSMPILNRMKTKKLL 500
D+H W TL+ +LN KTK +L
Sbjct: 28 DVHKWATLNRMVLNTKKTKSML 49
>SB_7068| Best HMM Match : ResIII (HMM E-Value=0.29)
Length = 1131
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 565 DIHLWNTLSMPILNRMKTKKLL 500
D+H W TL+ +LN KTK +L
Sbjct: 86 DVHKWATLNRMVLNTKKTKSML 107
>SB_3085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 565 DIHLWNTLSMPILNRMKTKKLL 500
D+H W TL+ +LN KTK +L
Sbjct: 28 DVHKWATLNRMVLNTKKTKSML 49
>SB_22732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-23)
Length = 457
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 565 DIHLWNTLSMPILNRMKTKKLL 500
D+H W TL+ +LN KTK +L
Sbjct: 369 DVHKWATLNRMVLNTKKTKSML 390
>SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 565 DIHLWNTLSMPILNRMKTKKLL 500
D+H W TL+ +LN KTK +L
Sbjct: 28 DVHKWATLNRMVLNTKKTKSML 49
>SB_5331| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 503
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 565 DIHLWNTLSMPILNRMKTKKLL 500
D+H W TL+ +LN KTK +L
Sbjct: 241 DVHKWATLNRMVLNIKKTKSML 262
>SB_10516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 565 DIHLWNTLSMPILNRMKTKKLL 500
D+H W TL+ +LN KTK +L
Sbjct: 129 DVHKWATLNHMVLNIKKTKSML 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,043,379
Number of Sequences: 59808
Number of extensions: 506216
Number of successful extensions: 987
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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