Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1362
(846 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64842-2|AAB37084.1| 462|Caenorhabditis elegans Hypothetical pr... 72 6e-13
U12787-1|AAA92672.1| 458|Caenorhabditis elegans HMG CoA synthas... 72 6e-13
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 29 5.5
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 29 5.5
Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical pr... 28 9.6
>U64842-2|AAB37084.1| 462|Caenorhabditis elegans Hypothetical
protein F25B4.6 protein.
Length = 462
Score = 71.7 bits (168), Expect = 6e-13
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +3
Query: 3 YMTHAYDFYKP--DLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLD 176
+M + +DF+KP + SE+P VDG LS+ YL A+ Y F K+ + GL S D
Sbjct: 193 HMKNTWDFFKPITPIPSEYPVVDGSLSLSSYLEAVRMTYTYFISKVNRHTTGIDGLNSFD 252
Query: 177 GMLFHSPYCKLVQKSLARVCFND 245
G+ HSP+ K+VQK LA + + D
Sbjct: 253 GVFLHSPFTKMVQKGLAVMNYTD 275
Score = 48.8 bits (111), Expect = 5e-06
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = +2
Query: 269 REKQFPGLSEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLY 448
R KQ G +HKL++ DR + S +++EKT P L R +GNMYTPSL+
Sbjct: 279 RHKQLNGNGV--DHKLDEN--DRAGLAKMIELSAQVWKEKTDPYLVFNRRIGNMYTPSLF 334
Query: 449 GGLVSYLISKSPDQLIGKKFLCF 517
L++YL + D + G+K + F
Sbjct: 335 AQLLAYL--AADDCVTGEKSILF 355
Score = 46.4 bits (105), Expect = 3e-05
Identities = 30/99 (30%), Positives = 46/99 (46%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + F+YGSGLAS ++ V S L+K+ + LD R P +F++ +
Sbjct: 351 KSILFFAYGSGLASAIFPGRVRQT----SNLDKIRQVAIRAIKRLDDRIQFTPEEFTETL 406
Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTY 795
R S + S LFP TY+L +D RR+Y
Sbjct: 407 QKREVFLRSKEIPKSPSETSLFPNTYFLDNMDKLYRRSY 445
>U12787-1|AAA92672.1| 458|Caenorhabditis elegans HMG CoA synthase
protein.
Length = 458
Score = 71.7 bits (168), Expect = 6e-13
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +3
Query: 3 YMTHAYDFYKP--DLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLD 176
+M + +DF+KP + SE+P VDG LS+ YL A+ Y F K+ + GL S D
Sbjct: 189 HMKNTWDFFKPITPIPSEYPVVDGSLSLSSYLEAVRMTYTYFISKVNRHTTGIDGLNSFD 248
Query: 177 GMLFHSPYCKLVQKSLARVCFND 245
G+ HSP+ K+VQK LA + + D
Sbjct: 249 GVFLHSPFTKMVQKGLAVMNYTD 271
Score = 48.8 bits (111), Expect = 5e-06
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = +2
Query: 269 REKQFPGLSEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLY 448
R KQ G +HKL++ DR + S +++EKT P L R +GNMYTPSL+
Sbjct: 275 RHKQLNGNGV--DHKLDEN--DRAGLAKMIELSAQVWKEKTDPYLVFNRRIGNMYTPSLF 330
Query: 449 GGLVSYLISKSPDQLIGKKFLCF 517
L++YL + D + G+K + F
Sbjct: 331 AQLLAYL--AADDCVTGEKSILF 351
Score = 46.4 bits (105), Expect = 3e-05
Identities = 30/99 (30%), Positives = 46/99 (46%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + F+YGSGLAS ++ V S L+K+ + LD R P +F++ +
Sbjct: 347 KSILFFAYGSGLASAIFPGRVRQT----SNLDKIRQVAIRAIKRLDDRIQFTPEEFTETL 402
Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTY 795
R S + S LFP TY+L +D RR+Y
Sbjct: 403 QKREVFLRSKEIPKSPSETSLFPNTYFLDNMDKLYRRSY 441
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical
protein K12F2.1 protein.
Length = 1969
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 102 DNCYNLFSKKMRKTDPNFKGLLSLDGMLFHSPYCKLVQKSL 224
+ CY++F + M DP+ +G L L + + +C + ++
Sbjct: 283 ERCYHIFYQIMSGNDPSLRGKLKLSNDITYYHFCSQAELTI 323
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain
3 protein.
Length = 1969
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 102 DNCYNLFSKKMRKTDPNFKGLLSLDGMLFHSPYCKLVQKSL 224
+ CY++F + M DP+ +G L L + + +C + ++
Sbjct: 283 ERCYHIFYQIMSGNDPSLRGKLKLSNDITYYHFCSQAELTI 323
>Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical
protein C36B1.9 protein.
Length = 674
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -2
Query: 530 PEPYENKETSSQLTDLEICLSNK--TQDLRIMMVCTYYQHYVQYEEKVLFSPQINLSYMS 357
PE N E S+ L + L+N ++ ++C QH Q EEK +F P+ N S
Sbjct: 582 PEQPTNGEESNLTIRLIVNLANSMGVREKLDDVICP--QHRAQEEEKEMFVPRTNGSTRQ 639
Query: 356 *MLF 345
MLF
Sbjct: 640 EMLF 643
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,205,949
Number of Sequences: 27780
Number of extensions: 403521
Number of successful extensions: 989
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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