Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1362
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.7  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 148 LTSKVCLV*MVCYFTLRTVNSFKNH 222
           L S VC +   C+   RT+NS  NH
Sbjct: 399 LNSAVCAL---CHKVFRTLNSLNNH 420


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 637 YPVKQLFHVMRR*AFLTLIQYSCHDIHLWNTLSMPIL 527
           Y V  L H++     LTL+ Y    IH  +T +  ++
Sbjct: 124 YGVALLLHMLTTTITLTLLAYQATKIHAVDTYAASVV 160


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 814 VINVSYHKYAFSDHLFFKGNMFLGTGHLKNQ*AHMVRNDNF 692
           V+N+SY+     D   FK   FL    L+N     + ++ F
Sbjct: 339 VLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAF 379


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 284 PGLSEFSNHKLEDTYFDREVEKAFMTYSLSL 376
           P + E  + +L     ++EVEKA +   LSL
Sbjct: 691 PQVDEVDDKELSGAEEEKEVEKALLKPLLSL 721


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,232
Number of Sequences: 438
Number of extensions: 4589
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)