Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1361
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1)                28   6.4  
SB_25564| Best HMM Match : RVT_1 (HMM E-Value=0.049)                   28   6.4  
SB_21739| Best HMM Match : VWA (HMM E-Value=6.4e-24)                   28   8.5  

>SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1)
          Length = 506

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -2

Query: 319 AAREDYESREPNRPFDSTCGERSINIMTYLHAV--HARGARAEDTARP 182
           AA +  + R   RP DST   R++ I T  H V  H        +ARP
Sbjct: 288 AAAQQTKDRTARRPGDSTSRSRTVQISTVSHVVSRHLNTRAPPISARP 335


>SB_25564| Best HMM Match : RVT_1 (HMM E-Value=0.049)
          Length = 588

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 106 IKYTCQIVNE*AIISLKEAQAFRYRRAEPYPQLGHPSRGPR 228
           ++ T  +V E  I S+       + + EPY  L HP + PR
Sbjct: 537 LRRTLAVVCEKEIASIYFISTAEFIKPEPYDHLSHPIKNPR 577


>SB_21739| Best HMM Match : VWA (HMM E-Value=6.4e-24)
          Length = 220

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 256 SRHR*NQRVCLVPATRSLPWPRSF 327
           +R+R + R  L    R+LPWPR+F
Sbjct: 195 ARYRGHMRESLFTIQRTLPWPRNF 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,877,372
Number of Sequences: 59808
Number of extensions: 326597
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)