Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1361
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-3|AAT92072.1|  394|Caenorhabditis elegans Aldehyde dehy...    27   9.9  
AF016672-2|AAO38633.1|  512|Caenorhabditis elegans Aldehyde dehy...    27   9.9  
AF016672-1|AAB66116.3|  563|Caenorhabditis elegans Aldehyde dehy...    27   9.9  

>AF016672-3|AAT92072.1|  394|Caenorhabditis elegans Aldehyde
           dehydrogenase protein6, isoform c protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 482 GQVGRDATYAPSNYTRLGANIPTS 411
           G  G  A  AP N+T +G N+PT+
Sbjct: 199 GMEGFVAAIAPFNFTAIGGNLPTA 222


>AF016672-2|AAO38633.1|  512|Caenorhabditis elegans Aldehyde
           dehydrogenase protein6, isoform b protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 482 GQVGRDATYAPSNYTRLGANIPTS 411
           G  G  A  AP N+T +G N+PT+
Sbjct: 199 GMEGFVAAIAPFNFTAIGGNLPTA 222


>AF016672-1|AAB66116.3|  563|Caenorhabditis elegans Aldehyde
           dehydrogenase protein6, isoform a protein.
          Length = 563

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 482 GQVGRDATYAPSNYTRLGANIPTS 411
           G  G  A  AP N+T +G N+PT+
Sbjct: 199 GMEGFVAAIAPFNFTAIGGNLPTA 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,213,332
Number of Sequences: 27780
Number of extensions: 245040
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)