Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1360
         (798 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CBC0E Cluster: Cyclin, N-terminal domain contai...    34   4.8  
UniRef50_Q7V0P3 Cluster: Glycosyl transferases group 1; n=2; Pro...    34   4.8  
UniRef50_Q4SZF6 Cluster: Chromosome undetermined SCAF11646, whol...    33   8.3  

>UniRef50_UPI00006CBC0E Cluster: Cyclin, N-terminal domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: Cyclin, N-terminal domain containing protein
           - Tetrahymena thermophila SB210
          Length = 779

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 725 IFDVCSSFNVNRSVCETVFSIF 790
           IF++CS +N+NR  C+T  +IF
Sbjct: 497 IFELCSDYNLNRQTCQTAINIF 518


>UniRef50_Q7V0P3 Cluster: Glycosyl transferases group 1; n=2;
           Prochlorococcus marinus|Rep: Glycosyl transferases group
           1 - Prochlorococcus marinus subsp. pastoris (strain CCMP
           1378 / MED4)
          Length = 386

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +3

Query: 345 ILNYSDTSIPIEKQIYEITHIKCLPG---HSKNANYSHKKKKLDHFGIRGRLN 494
           +LNY+D +  +EK+I +I+ I  +PG    S+  N  + KKK  + GI  + N
Sbjct: 147 VLNYADYAYLLEKKIVQISKINIIPGTGIDSRIFNPDNLKKKRINLGILNKKN 199


>UniRef50_Q4SZF6 Cluster: Chromosome undetermined SCAF11646, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF11646, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 296

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 500 ILCTKILQYENEYSAVENIIMWKYKKGGK 586
           +LC   LQ+  ++ A++N I  KYKK GK
Sbjct: 239 LLCRSCLQHGKDFEAIQNNIAMKYKKRGK 267


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,871,517
Number of Sequences: 1657284
Number of extensions: 13124530
Number of successful extensions: 27201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27195
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)