Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1360
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    27   3.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   7.2  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.5  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   9.5  

>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 597 KKCNFPPFLYFHIIIFSTAEYSFSYC 520
           + CNFP F YF  I+ S      + C
Sbjct: 153 RSCNFPEFSYFMKIVMSMVRNEIATC 178


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 685 SQCNSNSVSTSN*HPRKGGGLIVYNKI----MEKKMQFSAFFIFPH 560
           S CN+NSV+    H   G  ++ Y +     M KK  +  F+I PH
Sbjct: 834 STCNANSVNKLMKHVMMGNEMMKYPRSESFKMFKKSHWRYFWINPH 879


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 336 LHNILNYSDTSIPIEKQIYEITHIKCLPGHSKNANYSHKKKKLD 467
           + N  N  D S P +    + TH+  +P    +  + + KKKLD
Sbjct: 110 VENSSNIYDPSSPPDSPRKQQTHLGTIPPEHPDVFFHNLKKKLD 153


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 327 LRTLHNILNYSDTSIPIEKQIYEI 398
           LR LHN+L Y ++S  ++ Q  E+
Sbjct: 340 LRALHNLLTYFNSSAVVQPQQAEV 363


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 651 ISIHARAVGLLFIIRLWKKKCNFPPFLYFHIIIFSTAEYSFSYCNIF 511
           I +    + + F+   +K++   PP  Y HI +    +Y FS  + F
Sbjct: 227 IMLSTGPLSISFLWEKYKRQLPNPPAFYDHIRVLLERDYKFSNDSYF 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,850
Number of Sequences: 5004
Number of extensions: 63884
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)