Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1360
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794           29   5.7  
02_01_0091 + 646299-649082                                             28   9.9  

>11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794
          Length = 263

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 339 HNILNYSDTSIPIEKQIYEITHIKCLPGHSKNANYSHKKKKLDHFG 476
           +++  + +  +  EK+++ + H   L G    AN  +  K L H+G
Sbjct: 66  YHLKEWENNPVQNEKELFNLRHSSRLIGQDHKANADYFNKPLAHYG 111


>02_01_0091 + 646299-649082
          Length = 927

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 429 KNANYSHKKKKLDHFGIRGRLNFAFYVQKYYSMRTSIQQSKI*LCGNIKKAENCI 593
           K+ N       LDH         A +VQ   S+RT+++Q +  LCG +  A + +
Sbjct: 754 KSNNQKSDSINLDHLPPYSFETQAVWVQIPVSVRTTMEQMEYQLCGGVHAASHAL 808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,298,269
Number of Sequences: 37544
Number of extensions: 311696
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)