Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1360
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-5|CAB04510.2|  401|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    29   5.1  

>Z81554-5|CAB04510.2|  401|Caenorhabditis elegans Hypothetical
           protein F57G4.8 protein.
          Length = 401

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 229 NSLTFCCLKEKYFSNQLYVFSVSFNLKRLSFLI*GHYII--Y*ITVTPAFQSKNKFMR 396
           N+L FCC K+ +  ++ Y  S S  +     L   H+II     T   A + KN FM+
Sbjct: 266 NTLQFCCAKKFFMDDETYKLSKSTGIDNFFHL--SHFIISVQEFTTRDAMKIKNIFMK 321


>Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical
           protein T19C9.1 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 624 LLFIIRLWKKKCNFPPFLYFHIIIFSTAEYSFSYCNIFVHKMQNSIYP*SQSGQVFFFCA 445
           LL+ I + KK C  P  +  +I I     YSFS   I  + +   I+P         F  
Sbjct: 26  LLYSIFVSKKLCRKPDLVLIYIRISVDMVYSFSAFLIQAYYIARQIHP--------GFVM 77

Query: 444 NNLHFYCV-PANIL 406
            N+ FY   PAN+L
Sbjct: 78  KNMSFYLAWPANLL 91


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
           protein ZK1248.10 protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 675 TVTACQRVISIHARAVGLLFIIRLWKKKCNFPPFLYFH 562
           T   C  +  I  R++GL+   R W   C+  P+LY++
Sbjct: 17  TSAICGYLHRIEVRSIGLITRRRYWFALCDSTPYLYWY 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,147,482
Number of Sequences: 27780
Number of extensions: 353894
Number of successful extensions: 684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)