Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1360
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.3  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 711 VHIQIRASIHSATVTA 664
           +H+QIR  +HS  V A
Sbjct: 513 LHLQIRVGVHSGAVVA 528


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 679 CNSNSVSTSN*HPRKGGGLIVYN 611
           CN+NS +       KG GLIVY+
Sbjct: 195 CNTNSDTMVYIADEKGEGLIVYH 217


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 679 CNSNSVSTSN*HPRKGGGLIVYN 611
           CN+NS +       KG GLIVY+
Sbjct: 195 CNTNSDTMVYIADEKGEGLIVYH 217


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 679 CNSNSVSTSN*HPRKGGGLIVYN 611
           CN+NS +       KG GLIVY+
Sbjct: 195 CNTNSDTMVYIADEKGEGLIVYH 217


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 521 QYENEYSAVENIIMWKYKKGGKLHFFFH 604
           +Y N + +V N   W + +G K  F+FH
Sbjct: 166 KYPNNWLSVFNGTGWTFHEGRK-QFYFH 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,704
Number of Sequences: 438
Number of extensions: 4499
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)