Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1360
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42500.1 68418.m05173 disease resistance-responsive family pr...    32   0.38 
At5g42510.1 68418.m05175 disease resistance-responsive family pr...    31   0.89 
At5g06480.1 68418.m00726 MD-2-related lipid recognition domain-c...    30   1.5  
At3g11780.1 68416.m01445 MD-2-related lipid recognition domain-c...    30   2.0  
At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family...    29   3.6  
At1g22900.1 68414.m02860 disease resistance-responsive family pr...    28   6.2  
At1g65870.1 68414.m07474 disease resistance-responsive family pr...    28   8.3  
At1g53730.1 68414.m06114 leucine-rich repeat transmembrane prote...    28   8.3  

>At5g42500.1 68418.m05173 disease resistance-responsive family
           protein similar to disease resistance response protein
           206-d [Pisum sativum] gi|508844|gb|AAB18669
          Length = 185

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 500 ILCTKILQYENE-YSAVENIIMWKYKKGGKLHFFFHNLIINNKPTAL 637
           IL   +   E+E YS  +    +K  K   LHF+FH++I  +KPTA+
Sbjct: 15  ILLLSVSVTESEAYSTTKPCQGYKPDKFTHLHFYFHDVISGDKPTAV 61


>At5g42510.1 68418.m05175 disease resistance-responsive family
           protein similar to disease resistance response protein
           206-d [Pisum sativum] gi|508844|gb|AAB18669
          Length = 182

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 536 YSAVENIIMWKYKKGGKLHFFFHNLIINNKPTAL 637
           YS       +K +K   LHF+FH++I  +KPTA+
Sbjct: 25  YSTTTPYQGYKPEKFTHLHFYFHDVISGDKPTAV 58


>At5g06480.1 68418.m00726 MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           contains Pfam profile PF02221: ML domain
          Length = 153

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 357 SDTSIPIEKQIYEITHIKCLPGHSKNANYSHKKKKLD 467
           ++TS PI+   + + H + LPG++   +Y  K K LD
Sbjct: 93  TETSCPIQTGDFLVAHSQVLPGYTPPGSYLLKMKMLD 129


>At3g11780.1 68416.m01445 MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           weak similarity to
           phosphatidylglycerol/phosphatidylinositol transfer
           protein [Aspergillus oryzae] GI:10178615; contains Pfam
           profile PF02221: ML domain
          Length = 153

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 360 DTSIPIEKQIYEITHIKCLPGHSKNANYSHKKKKLD 467
           +TS P+    + + H + LPG++   +YS K K LD
Sbjct: 94  ETSCPVAIGDFLVAHSQVLPGYTPPGSYSLKMKMLD 129


>At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family
           protein Contains similarity to pre-mRNA processing
           protein PRP39 gb L29224 from S. cerevisiae. ESTs
           gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come
           from this gene
          Length = 768

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 684 HSATVTACQRVISIHARAV-GLLFIIRLWKKKCNF 583
           H A V A  +V+ ++ RAV G+ + + +W   C F
Sbjct: 145 HEARVGAMDKVVEVYERAVLGVTYSVDIWLHYCTF 179


>At1g22900.1 68414.m02860 disease resistance-responsive family
           protein similar to pathogenesis-related protein [Pisum
           sativum] gi|4585273|gb|AAD25355
          Length = 187

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 587 LHFFFHNLIINNKPTAL 637
           LHF+FH++I  +KPT +
Sbjct: 47  LHFYFHDIISGDKPTTI 63


>At1g65870.1 68414.m07474 disease resistance-responsive family
           protein similar to dirigent protein [Forsythia x
           intermedia] gi|6694693|gb|AAF25357; similar to disease
           resistance response protein 206-d [Pisum sativum]
           gi|508844|gb|AAB18669
          Length = 189

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +2

Query: 587 LHFFFHNLIINNKPTAL 637
           LHF+FH+++  +KPT++
Sbjct: 47  LHFYFHDIVSGDKPTSV 63


>At1g53730.1 68414.m06114 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3360289 from [Zea mays]
           (Plant Mol. Biol. 37 (5), 749-761 (1998))
          Length = 719

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 509 TKILQYENEYSAVENIIMWKYKKGGKLHFFFHNLIINNKPTALAW 643
           TK++ Y  E+   ++++++++ K G LH F H  +   +  AL W
Sbjct: 475 TKLVGYCAEHG--QHLVVYEFHKNGSLHDFLH--LSEEESKALVW 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,173
Number of Sequences: 28952
Number of extensions: 293756
Number of successful extensions: 577
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)