Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1359
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.25 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    29   1.0  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   2.4  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    27   3.1  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   5.4  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   5.4  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +3

Query: 387 TLKSIVSLASSALRSSTENIRASVHESHSRHPSCGIKTHLYEL 515
           ++ S+VS ASSAL +S  +  ASV  S S   S  +KT +  L
Sbjct: 262 SVSSVVSSASSALSASASSASASVSSSASSDASPALKTGINAL 304


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 643 PGSVSACRVS*ERSVIGVQKGNKKKTI 563
           PGS+  CRV  E++ + VQ  N+ +T+
Sbjct: 23  PGSIKDCRVEGEKAFLTVQDENENETV 49


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 366 KKDSRYITLKSIVSLASSALRSSTENIRASVHESHSRHPS 485
           KK+   + + S V++A++A  +STE++ + V +S S+  S
Sbjct: 156 KKEESNVAIPSEVTVAANAFSASTEDVYSIVGDSLSKKAS 195


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 776 LYLHSNVMLILYIYTKCRTEKNVKCSFSDCNCNTGYSVGFMCNAT-GQCECL 624
           L++H NV  +L    +   + N+K  FSD   +  Y V  + + T G  E L
Sbjct: 398 LFVHRNVPGVLRQVNELFIDHNIKSQFSDSRGDIAYLVADISDCTPGSLEAL 449


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 460 TSRIRGILLAESKPTCTNC-KTNLE 531
           T R R I   E+KP C NC KTN E
Sbjct: 38  TCRRRRIKCDETKPFCLNCTKTNRE 62


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 238 SSKSRAIEDRRYRRSHIVYQDLGNQC*EPTQI 143
           S K+R  ++ R R+S  V + +GN C   TQ+
Sbjct: 19  SRKTRPCDNCRLRKSRCVVESIGNPCLLCTQL 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,958
Number of Sequences: 5004
Number of extensions: 64093
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)