Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1359
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 30 2.5
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 29 3.2
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 29 5.7
07_01_0407 + 3122383-3122445,3135572-3136393 29 5.7
07_01_0403 + 3077544-3077606,3090738-3091559 29 5.7
07_01_0399 + 3043624-3043818,3045494-3046315 29 5.7
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 29 5.7
01_02_0058 - 10699702-10700517,10700997-10701206 29 5.7
02_05_1245 + 35223504-35224778 28 7.5
10_01_0181 - 2041502-2043013 28 9.9
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 610 PMTPGKHSHCPVALHIKPTEYPVLQLQSENEHFTFFSVLHLVYIY 744
P G + CP+AL + PT +Q+ E F++ + + +V Y
Sbjct: 226 PQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAY 270
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 568 FFFYYLSGHRSHFSPMTP-GKHSHCPVALHIKPTEYPVLQLQSENEHFTFFSVLHLVYIY 744
F F +SG S P P G + P+AL + PT +Q+ E F + + + +V Y
Sbjct: 291 FCFPIISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAY 350
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 568 FFFYYLSG-HRSHFSPMTPGKHSHCPVALHIKPTEYPVLQLQSENEHFTFFSVLHLVYIY 744
F F +SG RS P + G + P+AL + PT +Q+ E F + + + +V Y
Sbjct: 377 FCFPIISGIMRSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAY 436
>07_01_0407 + 3122383-3122445,3135572-3136393
Length = 294
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 463 SCTDALIFSVEDLSALLANETMDFKV 386
SC D LIF+ D S++L+N + F V
Sbjct: 70 SCADILIFAARDASSILSNGRVRFDV 95
>07_01_0403 + 3077544-3077606,3090738-3091559
Length = 294
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 463 SCTDALIFSVEDLSALLANETMDFKV 386
SC D LIF+ D S++L+N + F V
Sbjct: 70 SCADILIFAARDASSILSNGRVRFDV 95
>07_01_0399 + 3043624-3043818,3045494-3046315
Length = 338
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 463 SCTDALIFSVEDLSALLANETMDFKV 386
SC D LIF+ D S++L+N + F V
Sbjct: 114 SCADILIFAARDASSILSNGRVRFDV 139
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 791 ICAGKLYLHSNVMLILYIYTKCRTEKNVKCSFSDCNCN 678
IC G+ +L N+ L + + + + +KCSF C C+
Sbjct: 218 IC-GEKHLKKNIKRHLRAHEEVPSTERIKCSFEGCECS 254
>01_02_0058 - 10699702-10700517,10700997-10701206
Length = 341
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 463 SCTDALIFSVEDLSALLANETMDFKV 386
SC D LIF+ D S++L+N + F V
Sbjct: 119 SCADILIFAARDASSILSNGRVRFDV 144
>02_05_1245 + 35223504-35224778
Length = 424
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 339 PKEN*SRDKKKDSRYITLKSIVSLASSALRSSTENIRASVHESHSRHP 482
P+E ++++KD R KS V+ AS A +ST H R P
Sbjct: 15 PEEK-EKEEEKDHRMCKTKSSVATASMAASASTATTPRKHQHQHQRSP 61
>10_01_0181 - 2041502-2043013
Length = 503
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -2
Query: 213 TVDIGEVTSSIKTLETSAKNLLRSVSLLNIYTYIF 109
T+ EV SS++ LET NL VSLLN IF
Sbjct: 142 TIVSREVKSSLENLETVLDNLKEFVSLLNGCERIF 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,575,051
Number of Sequences: 37544
Number of extensions: 373575
Number of successful extensions: 870
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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