Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1359
         (799 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    52   3e-08
AY994093-1|AAX86006.1|   45|Anopheles gambiae metallothionein 1 ...    33   0.008
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    31   0.031
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    31   0.031
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            29   0.22 
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    27   0.89 
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    26   1.2  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    25   2.7  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   6.3  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 51.6 bits (118), Expect = 3e-08
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = -3

Query: 692 DCNCNTGYSVGFMCNATGQCECLPGVIGEKCDRC 591
           +C C+   S    CNA G+C+C PGV GEKCDRC
Sbjct: 396 NCGCDPVGSRSLQCNAEGRCQCKPGVTGEKCDRC 429



 Score = 44.4 bits (100), Expect = 4e-06
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -3

Query: 689  CNCNTGYSVGFMCNATGQCECLPGVIGEKCDRCPE 585
            C+C+   S G  CN  GQC C   V G +CDRC E
Sbjct: 987  CDCDPSGSKGSQCNQYGQCPCNDNVEGRRCDRCKE 1021



 Score = 41.9 bits (94), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 689  CNCNTGYSVGFMCNA-TGQCECLPGVIGEKCDRC 591
            CNC+   S    C+  +G C C PGV+G+KCD+C
Sbjct: 939  CNCDPIGSYNASCDTYSGDCFCKPGVVGKKCDKC 972



 Score = 30.3 bits (65), Expect = 0.072
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 656 MCNA-TGQCECLPGVIGEKCDRC 591
           +C+A  G C C P VIG  C+ C
Sbjct: 901 ICDAINGNCHCKPNVIGRTCNEC 923



 Score = 29.1 bits (62), Expect = 0.17
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 689 CNCNTGYSVGFMCNA-TGQCECLPGVIGEKCDRC 591
           C+CN    +   C++ TG+C C     G+ CD+C
Sbjct: 727 CDCNKHAEI---CDSETGRCICQHNTAGDTCDQC 757



 Score = 25.4 bits (53), Expect = 2.0
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 707 KCSFSDCNCNTGYSVGFMCNATGQCECLPGVIGEKCDRC 591
           KC+     C T  S       T  C+C+    G  CDRC
Sbjct: 283 KCNGHASECTT--STALDGQRTRVCKCMHFTDGPDCDRC 319


>AY994093-1|AAX86006.1|   45|Anopheles gambiae metallothionein 1
           protein.
          Length = 45

 Score = 33.5 bits (73), Expect = 0.008
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 707 KCSFSDCNCNTGYSVGFMCNATGQCECLPGVIGEKCDRC 591
           KC  +DC C +G   G  C    +C C  G   EK   C
Sbjct: 4   KCCGNDCKCTSGCGSGQPCATDCKCACASGGCKEKSGGC 42


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 31.5 bits (68), Expect = 0.031
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 788 CAGKLYLHSNVMLILYIYTKCRTEKNVKCSFSDCNC--NTGYSVGFMCNATGQCECLPG 618
           C  KL L  N   +LY   K   +  + CS ++  C      S+ F  N +  C CLPG
Sbjct: 370 CEAKLILE-NCGCVLYYLPKLYEDTKI-CSRANARCYEQIRSSIAFTANTSISCSCLPG 426


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 31.5 bits (68), Expect = 0.031
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 788 CAGKLYLHSNVMLILYIYTKCRTEKNVKCSFSDCNC--NTGYSVGFMCNATGQCECLPG 618
           C  KL L  N   +LY   K   +  + CS ++  C      S+ F  N +  C CLPG
Sbjct: 370 CEAKLILE-NCGCVLYYLPKLYEDTKI-CSRANARCYEQIRSSIAFTANTSISCSCLPG 426


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 28.7 bits (61), Expect = 0.22
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -2

Query: 381 TVSLFFYHGSNFLLGSANEFSRS*QTGQGGLVLHDATPQLHIHQTELLRP-----KVAQL 217
           TV  F + G N L   + +++R  +  +  L  H A  +LH++  +LL+       V  L
Sbjct: 395 TVDHFTFSGLNSLALLSLDYNRISRIDRQALRNHSALQELHLNGNKLLQVPDALYDVPLL 454

Query: 216 KTVDIGE 196
           +T+D+GE
Sbjct: 455 RTLDLGE 461


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 137 LTDLSRFLALVSKVL--IDDVTSPISTVFNCATFGRSSSV 250
           L  L+ FL LV++ L  + D    + T FNC  F  +SSV
Sbjct: 270 LLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSV 309


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 641 GQCECLPGVIGEKCDRCPE 585
           GQC C PG  GE C+ C E
Sbjct: 544 GQCYCNPGFEGEHCE-CNE 561


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 641 GQCECLPGVIGEKCD 597
           GQCEC  G  G  CD
Sbjct: 614 GQCECREGWTGPACD 628


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +1

Query: 448  GHLYTSRIRGILLAESKPTCTNCKTNLESISH 543
            GH +      +      P C  C  ++ES++H
Sbjct: 933  GHAFVHEFLHVFGFAPSPDCPRCAGSVESVAH 964


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,821
Number of Sequences: 2352
Number of extensions: 15294
Number of successful extensions: 54
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)