Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1359
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.81 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.7  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   7.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 453 SVHESHSRHPSCGIKTHLYELQNEFREH 536
           +VH   S+ P C I   +Y   N  R H
Sbjct: 24  NVHTRPSKEPICNICKRVYSSLNSLRNH 51


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 132 LNIYTYIFF*IMYLNFILMY 73
           ++IY+ I F I+++ FI++Y
Sbjct: 362 IDIYSRIGFPILFMLFIILY 381


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 219 IARLLDEAVRFDGY 260
           IAR+LDE +   GY
Sbjct: 398 IARILDEPIELSGY 411


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 694 ENEHFTFFSVLHLVYIY 744
           +N HF F  V+ L+++Y
Sbjct: 3   KNYHFFFILVITLIFLY 19


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 191 HRLSRPWKPVLRTYSDR*VYLI 126
           H    PW P+LR   D  +Y I
Sbjct: 540 HTWIHPWLPLLRNRLDTLIYPI 561


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,289
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)