Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1359
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ...    28   6.2  

>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
           significant) WD-40 repeats (PF0400); similar to Trp-Asp
           repeat protein (PIR:T40094) [Schizosaccharomyces]
          Length = 445

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 598 SHFSPMTPGKHSHCPVALHIKPTE 669
           SH+S +T GKH    V  H+ P+E
Sbjct: 153 SHYSTLTSGKHDVLNVQGHVSPSE 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,540
Number of Sequences: 28952
Number of extensions: 321032
Number of successful extensions: 783
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)