Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1358
         (714 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O81612 Cluster: Knotted I class homeodomain protein; n=...    33   5.3  
UniRef50_Q2JNS0 Cluster: CRISPR-associated protein, Crm2 family;...    33   9.2  

>UniRef50_O81612 Cluster: Knotted I class homeodomain protein; n=1;
           Pisum sativum|Rep: Knotted I class homeodomain protein -
           Pisum sativum (Garden pea)
          Length = 251

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 163 KRVDRCGSFYHRTHSLQSTHYHGTC-NIIETWNLIKTKKWNEPSIYKYKYLI 11
           KR+ +  SF ++ H  Q  H+H    + +E WNLI T + + P I+ Y  L+
Sbjct: 36  KRIRKLFSFRNKLHHHQHQHHHHQQQSAVENWNLIVTSQLHTP-IFHYPNLM 86


>UniRef50_Q2JNS0 Cluster: CRISPR-associated protein, Crm2 family;
           n=2; Synechococcus|Rep: CRISPR-associated protein, Crm2
           family - Synechococcus sp. (strain JA-2-3B'a(2-13))
           (Cyanobacteria bacteriumYellowstone B-Prime)
          Length = 736

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 324 AHRNHHKDTAHPEAKRSRSQLWCQPFNTLLLRGRIIMIV--AHKCLQTHPT 470
           AHR H   +  PE  R R+  W  PF  L + G  +++V  AHK L+   T
Sbjct: 440 AHRLHGL-SPDPETGRDRNGEWIHPFEILTIGGDDVLVVVPAHKALEIAAT 489


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,261,387
Number of Sequences: 1657284
Number of extensions: 13156697
Number of successful extensions: 29700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29693
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)