Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1358
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    29   0.50 
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   3.5  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    26   6.1  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    26   6.1  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   8.1  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.1  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   8.1  

>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 253 SQKIPNNCQYRVYIVGASRISMATPKKLTRKRVDRCGSFYHRTHSLQSTHYHGTCNIIE 77
           S K+ N    RVY V    ++   P  ++++++ +  +  HR   LQ   Y    N I+
Sbjct: 2   SLKVQNPNNVRVYTVSGEGVTQRLPNWISKRKLKKDYALSHRIELLQDFEYPEASNRIK 60


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 127 THSLQSTHYHGTCNIIETWNLIKTKKWNEPSIYKYKYL 14
           TH L S HY G  N+++ WN   T      +I   K+L
Sbjct: 471 TH-LHSDHYLGLLNVLQAWNKANTNNSMHINIIGPKFL 507


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 250 ENLFFFLSRIAVHYSLKPNGQWVLVLIGITIRILPIQRPRG 372
           E   FF+S I   +S   NG +V V +   + +L I +P G
Sbjct: 503 EACIFFISVIVSVFSSIENGIYVSVCLAAALLLLRIAKPHG 543


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -3

Query: 91  CNIIETWN--LIKTKKWNEPSIYKYKYL 14
           CN++ETW    +  KK +     +YKYL
Sbjct: 140 CNVVETWKHLYVTLKKESLEGPIRYKYL 167


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 241 PNNCQYRVYIVGASRISMATPKKLTRKRVDRCGSFYHRTHSLQSTHYHGTCNIIET 74
           PN+  + +  +G  RI+  + KK+   +VD+         S++  H H T N  E+
Sbjct: 53  PNDALFVIDTLGDDRIAKRSRKKIKPLKVDQ---ILENKSSIEKVHSHLTNNSTES 105


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -3

Query: 217 YIVGASRISMATPKKLTRKRVDRCGSFYHRTH----SLQSTHYHGTC 89
           YIVGA   ++  P+K +  + D  GS +   H         H+HG C
Sbjct: 263 YIVGAVIYALRIPEKWSPGKYDVFGSSHQWFHVCVIIAAFCHFHGVC 309


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +3

Query: 312 VGTGAHRNHHKDTAHPEAKRSRSQLWCQPFN----TLLLRGRIIMIVAHKCLQTHPT 470
           V  G HR+       P+ K  R++LW   +       +  GR + I   +C    PT
Sbjct: 387 VANGLHRSCENPNIDPKTKELRNRLWWSVYTMDRLISIATGRPLSIADSECDAALPT 443


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 193  KFYLPQQYILYIDNCLGFFENLFFFLSRIAVHYSLKPN 306
            +F+  +++  +I N  GF+ +L  FL  IAV Y   PN
Sbjct: 1042 EFFNLKRFWSWITN--GFYHSLLLFLCSIAVFYYDGPN 1077


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,035
Number of Sequences: 5004
Number of extensions: 59378
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)