Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1358
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    31   0.69 
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     29   4.8  
03_02_0103 + 5640652-5641029,5641458-5641693,5642292-5642367,564...    29   4.8  
05_04_0251 - 19381397-19381904,19382003-19382157,19382897-193830...    28   8.5  

>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
            31678677-31678715
          Length = 1885

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 390  CQPFNTL---LLRGRIIMIVAHKCLQTHPTTGNTTFPESLIEV 509
            C+  N+L    L G + ++ AH+CL  H   G    P+SL E+
Sbjct: 1428 CESLNSLEGLQLLGNLRLLCAHRCLSGHEEDGMCILPQSLEEI 1470


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 390  CQPFNTL---LLRGRIIMIVAHKCLQTHPTTGNTTFPESL 500
            C+  N+L    L G +  ++AH+CL  H   G    P+SL
Sbjct: 1367 CESLNSLEGLQLLGNLRGLLAHRCLSGHGEDGRCILPQSL 1406


>03_02_0103 +
           5640652-5641029,5641458-5641693,5642292-5642367,
           5642450-5642526,5642672-5642702,5642798-5642950,
           5643259-5643300,5643372-5643440,5643645-5643752
          Length = 389

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
 Frame = -1

Query: 144 VVSIIALTVFNLPIIMGLATLSKHGIS----LKLKSGM------NPVFISIS 19
           +VS I + VF+LP++  + T S  G+S    L+LK  M      NP FIS S
Sbjct: 338 MVSRIYMCVFDLPMLFLMETWSSSGVSNHTKLQLKQNMMELPIENPTFISAS 389


>05_04_0251 -
           19381397-19381904,19382003-19382157,19382897-19383012,
           19383185-19383286,19384321-19384438,19384622-19384735
          Length = 370

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 709 STTLARVRVSNIVRLSPVSSPTK 641
           S T  RVR S  V LSP+ SPTK
Sbjct: 228 SITFVRVRPSTPVDLSPLPSPTK 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,416,563
Number of Sequences: 37544
Number of extensions: 347786
Number of successful extensions: 758
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)