Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1358
         (714 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032538-1|AAH32538.1|  620|Homo sapiens SRBD1 protein protein.        30   7.2  
AK001241-1|BAA91577.1|  620|Homo sapiens protein ( Homo sapiens ...    30   7.2  
AC012072-1|AAY14821.1|  249|Homo sapiens unknown protein.              30   7.2  
AL358472-2|CAI14016.1| 1384|Homo sapiens DENN/MADD domain contai...    30   9.5  

>BC032538-1|AAH32538.1|  620|Homo sapiens SRBD1 protein protein.
          Length = 620

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = -3

Query: 271 LGKKKDSQK-IPNNCQYRVYIVGASRISMATPKKLTRKRVDRCGSFYHRTHSLQSTHYHG 95
           + K KD+   I N CQ R ++   S ++  + KK+  K VD+   + H + ++++ H+H 
Sbjct: 2   IAKDKDTLDFIRNLCQKR-HVCIQSSLAKVSSKKVNEKDVDKFLLYQHFSCNIRNIHHHQ 60

Query: 94  TCNIIETWNL-IKTKKWN 44
              I    NL + T K N
Sbjct: 61  ILAINRGENLKVLTVKVN 78


>AK001241-1|BAA91577.1|  620|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10379 fis, clone NT2RM2002014. ).
          Length = 620

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = -3

Query: 271 LGKKKDSQK-IPNNCQYRVYIVGASRISMATPKKLTRKRVDRCGSFYHRTHSLQSTHYHG 95
           + K KD+   I N CQ R ++   S ++  + KK+  K VD+   + H + ++++ H+H 
Sbjct: 2   IAKDKDTLDFIRNLCQKR-HVCIQSSLAKVSSKKVNEKDVDKFLLYQHFSCNIRNIHHHQ 60

Query: 94  TCNIIETWNL-IKTKKWN 44
              I    NL + T K N
Sbjct: 61  ILAINRGENLKVLTVKVN 78


>AC012072-1|AAY14821.1|  249|Homo sapiens unknown protein.
          Length = 249

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = -3

Query: 271 LGKKKDSQK-IPNNCQYRVYIVGASRISMATPKKLTRKRVDRCGSFYHRTHSLQSTHYHG 95
           + K KD+   I N CQ R ++   S ++  + KK+  K VD+   + H + ++++ H+H 
Sbjct: 2   IAKDKDTLDFIRNLCQKR-HVCIQSSLAKVSSKKVNEKDVDKFLLYQHFSCNIRNIHHHQ 60

Query: 94  TCNIIETWNL-IKTKKWN 44
              I    NL + T K N
Sbjct: 61  ILAINRGENLKVLTVKVN 78


>AL358472-2|CAI14016.1| 1384|Homo sapiens DENN/MADD domain
           containing 4B protein.
          Length = 1384

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 414 LRGRIIMIVAHKCLQTHPTTGNTTFP 491
           +RGR +  +A KCL  HPT    T+P
Sbjct: 61  MRGRNVPSLASKCLTRHPTATQQTWP 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,055,278
Number of Sequences: 237096
Number of extensions: 2106442
Number of successful extensions: 3176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3175
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)