Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1358
         (714 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069178-1|AAL39323.1|  352|Drosophila melanogaster GH22719p pro...    30   3.6  
AE013599-487|AAF59201.1|  352|Drosophila melanogaster CG1942-PA ...    30   3.6  
AY075443-1|AAL68256.1|  352|Drosophila melanogaster RE04845p pro...    29   8.3  
AE013599-486|AAF59202.1|  352|Drosophila melanogaster CG1941-PA ...    29   8.3  

>AY069178-1|AAL39323.1|  352|Drosophila melanogaster GH22719p
           protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 17  VLILINTG--FIPLFSFNEIPCFDNVASP--MIMGRLKTVSAMIETTTSVYPFSSQFF 178
           V + I TG   +P FSF E+  FD VA+P   ++ R +     +   + + P    FF
Sbjct: 227 VRMAIRTGSSIVPSFSFGEVDIFDQVANPPNSLLRRFQDFVKKLTGVSPLIPVGRGFF 284


>AE013599-487|AAF59201.1|  352|Drosophila melanogaster CG1942-PA
           protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 17  VLILINTG--FIPLFSFNEIPCFDNVASP--MIMGRLKTVSAMIETTTSVYPFSSQFF 178
           V + I TG   +P FSF E+  FD VA+P   ++ R +     +   + + P    FF
Sbjct: 227 VRMAIRTGSSIVPSFSFGEVDIFDQVANPPNSLLRRFQDFVKKLTGVSPLIPVGRGFF 284


>AY075443-1|AAL68256.1|  352|Drosophila melanogaster RE04845p
           protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 17  VLILINTG--FIPLFSFNEIPCFDNVASPMIMGRLKTVSAMIETTTSVYP 160
           V + I TG   +P FSF E+   D VA+P    R++     ++  T + P
Sbjct: 227 VKMAIRTGSSIVPTFSFGEVDILDQVANPP-NSRVRRFQDFVKRITGISP 275


>AE013599-486|AAF59202.1|  352|Drosophila melanogaster CG1941-PA
           protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 17  VLILINTG--FIPLFSFNEIPCFDNVASPMIMGRLKTVSAMIETTTSVYP 160
           V + I TG   +P FSF E+   D VA+P    R++     ++  T + P
Sbjct: 227 VKMAIRTGSSIVPTFSFGEVDILDQVANPP-NSRVRRFQDFVKRITGISP 275


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,793,844
Number of Sequences: 53049
Number of extensions: 617940
Number of successful extensions: 1342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)