Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1358
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40061-6|AAA81152.2|  426|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z48334-2|CAA88309.1|  357|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormo...    28   7.6  

>U40061-6|AAA81152.2|  426|Caenorhabditis elegans Hypothetical
           protein ZK563.6 protein.
          Length = 426

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 447 KCLQTHPTTGNTTFPESLIEVRTVA 521
           +CL T  T GNT FP +   V+TVA
Sbjct: 96  RCLMTLQTVGNTMFPNATPPVQTVA 120


>Z48334-2|CAA88309.1|  357|Caenorhabditis elegans Hypothetical
           protein F10B5.2 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 VYPFSSQFFRCCH*NSTCPNNIYSILTIVWDFLRIFFF 265
           V+    Q+ R  H  S CPN++ S   +   F+R+ FF
Sbjct: 257 VFEGFEQWKRIIHLMSCCPNSLGSEKELFMSFIRVLFF 294


>Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 387 WCQPFNTLLLRGRIIMIVAHKCLQTHP 467
           WC  F  +LL  R+I+++ H+ L   P
Sbjct: 21  WCPIFTLILLFVRVIIVIFHRRLYARP 47


>Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 387 WCQPFNTLLLRGRIIMIVAHKCLQTHP 467
           WC  F  +LL  R+I+++ H+ L   P
Sbjct: 21  WCPIFTLILLFVRVIIVIFHRRLYARP 47


>AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 72 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 551 TRHIYDCSSNSYCPHFYKRFWECRITGGRMCL*ALMSHYHDYSATK 414
           T + Y CS N+ C   Y+R   CR      CL A MS  ++ S+ +
Sbjct: 37  TENQYACSRNNNCATSYERKILCRACRYTNCLKAGMSRGNEASSQR 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,551
Number of Sequences: 27780
Number of extensions: 324032
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)