BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1358 (714 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U40061-6|AAA81152.2| 426|Caenorhabditis elegans Hypothetical pr... 30 1.9 Z48334-2|CAA88309.1| 357|Caenorhabditis elegans Hypothetical pr... 28 5.8 Z92849-14|CAE17857.1| 359|Caenorhabditis elegans Hypothetical p... 28 7.6 Z78414-4|CAE17982.1| 359|Caenorhabditis elegans Hypothetical pr... 28 7.6 AF016654-7|AAB66029.2| 324|Caenorhabditis elegans Nuclear hormo... 28 7.6 >U40061-6|AAA81152.2| 426|Caenorhabditis elegans Hypothetical protein ZK563.6 protein. Length = 426 Score = 29.9 bits (64), Expect = 1.9 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 447 KCLQTHPTTGNTTFPESLIEVRTVA 521 +CL T T GNT FP + V+TVA Sbjct: 96 RCLMTLQTVGNTMFPNATPPVQTVA 120 >Z48334-2|CAA88309.1| 357|Caenorhabditis elegans Hypothetical protein F10B5.2 protein. Length = 357 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 152 VYPFSSQFFRCCH*NSTCPNNIYSILTIVWDFLRIFFF 265 V+ Q+ R H S CPN++ S + F+R+ FF Sbjct: 257 VFEGFEQWKRIIHLMSCCPNSLGSEKELFMSFIRVLFF 294 >Z92849-14|CAE17857.1| 359|Caenorhabditis elegans Hypothetical protein H12D21.11 protein. Length = 359 Score = 27.9 bits (59), Expect = 7.6 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 387 WCQPFNTLLLRGRIIMIVAHKCLQTHP 467 WC F +LL R+I+++ H+ L P Sbjct: 21 WCPIFTLILLFVRVIIVIFHRRLYARP 47 >Z78414-4|CAE17982.1| 359|Caenorhabditis elegans Hypothetical protein H12D21.11 protein. Length = 359 Score = 27.9 bits (59), Expect = 7.6 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 387 WCQPFNTLLLRGRIIMIVAHKCLQTHP 467 WC F +LL R+I+++ H+ L P Sbjct: 21 WCPIFTLILLFVRVIIVIFHRRLYARP 47 >AF016654-7|AAB66029.2| 324|Caenorhabditis elegans Nuclear hormone receptor familyprotein 72 protein. Length = 324 Score = 27.9 bits (59), Expect = 7.6 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -2 Query: 551 TRHIYDCSSNSYCPHFYKRFWECRITGGRMCL*ALMSHYHDYSATK 414 T + Y CS N+ C Y+R CR CL A MS ++ S+ + Sbjct: 37 TENQYACSRNNNCATSYERKILCRACRYTNCLKAGMSRGNEASSQR 82 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,444,551 Number of Sequences: 27780 Number of extensions: 324032 Number of successful extensions: 803 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 771 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 803 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1666201324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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