Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1358
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.6  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 89  ASPMIMGRLKTVSAMIETTTSVYPFSS 169
           +SP   G   + S    TT+S+YP+ S
Sbjct: 67  SSPQHSGSSASTSPAARTTSSMYPYVS 93


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 136 YHRTHSLQSTHYHGTCNIIETWN 68
           +H+T SLQ  HY     + E+++
Sbjct: 355 HHQTQSLQHLHYRQPPTLSESYS 377


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 49  WNEPSIYKYKYL 14
           W+   IYKYKY+
Sbjct: 313 WSNFPIYKYKYI 324


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 49  WNEPSIYKYKYL 14
           W+   IYKYKY+
Sbjct: 313 WSNFPIYKYKYI 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,449
Number of Sequences: 438
Number of extensions: 3877
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)