Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1358
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66290.1 68414.m07528 F-box family protein contains F-box dom...    30   1.3  
At5g24560.1 68418.m02900 F-box family protein / SKP1 interacting...    28   5.3  
At4g32620.1 68417.m04644 expressed protein predicted protein T10...    27   9.3  

>At1g66290.1 68414.m07528 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 453

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 277 FCLGKKKDSQKIPNNCQYRVYIVGASRISMAT 182
           FC GKK D   +P     R ++VG SR+   T
Sbjct: 281 FCRGKKFDPDDLPKREMIRNFLVGLSRVKTMT 312


>At5g24560.1 68418.m02900 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 251

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 199 YLPQQYILYIDNCLGFFENLFFFL 270
           +LP  Y +YIDN L  F N   FL
Sbjct: 46  FLPSDYRMYIDNSLSRFSNKQLFL 69


>At4g32620.1 68417.m04644 expressed protein predicted protein
            T10M13.8, Arabidopsis thaliana
          Length = 1544

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 315  GTGAHRNHHKDTAHPEAKRSRSQLW 389
            G G HRNH   +     KR+ S+ W
Sbjct: 1418 GNGYHRNHQNKSQRINGKRNTSERW 1442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,471,851
Number of Sequences: 28952
Number of extensions: 298064
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)