Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1357
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.6  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   8.0  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   8.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   8.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = -3

Query: 507 FECTF*MFN---YFLSCIIIIQLFNIYLSL*HLTKSQCFIIHFNFRFHLLKECDSISLVD 337
           F C F  FN    FL C+    L  ++L   +   S  FII   F  HLL  C  I L+ 
Sbjct: 182 FCCAFIFFNMHLLFLLCLDYFTLHLLFLPCIYYFYS-AFII---FTIHLLFYCVLIILLC 237

Query: 336 ILF 328
           I +
Sbjct: 238 IYY 240


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 638 PYLPRNVLISPSD*LSLECWLRTYMIWENCWLTNS 742
           P +P+ + I P    + E W++  + +    LTN+
Sbjct: 48  PEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNN 82


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 638 PYLPRNVLISPSD*LSLECWLRTYMIWENCWLTNS 742
           P +P+ + I P    + E W++  + +    LTN+
Sbjct: 48  PEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNN 82


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 523 VTPSALRVYFLNVQLFSQLHHNHSAVQYI 437
           VTPSAL + +    +++++    S V  +
Sbjct: 40  VTPSALSIIYYRQPIYAKISETKSIVAMV 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,286
Number of Sequences: 336
Number of extensions: 3395
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)