Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1357
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    36   0.008
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    28   1.2  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.9  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   2.9  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   6.6  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    26   6.6  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    26   6.6  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    26   6.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.8  

>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 80  IDVSDFLTKKQASEP-ALAADWAKLEELYNKKLWHQLTLKLQEFVKNP 220
           +++SDFL  +    P +L   +  +E+LY +KLW QLT  L  F   P
Sbjct: 7   VNMSDFLHDQATRAPESLQQSYILMEDLYERKLWKQLTDALIVFFDTP 54



 Score = 30.3 bits (65), Expect = 0.31
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 604 LRYVGCADGGEALPATERADIAFRLALSGVLAPDVYDLGELLAHQFFIL 750
           L Y+ C D  +    TE  + A  L+++ +L  D+Y+ GELL H  F L
Sbjct: 183 LLYLSCIDLDKC-SHTELVERAVDLSVAAILG-DIYNFGELLLHPVFEL 229



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 528 VHGRFYKLASEYYRVRGPTGRYYR 599
           +H  +Y ++++YY+ +    +YYR
Sbjct: 157 IHSSYYSVSADYYKAKADYAQYYR 180


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 582 SDHGLCNI-PRLTYRIVRELESHRQHF 505
           +D  + NI P  +Y+ VRE+ESHR HF
Sbjct: 464 NDLYMSNIKPWESYKYVREIESHRIHF 490


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +2

Query: 41   QSSENMATVKFAVI---DVSDFLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFV 211
            + +E M +V F VI    +SDF T        +  +W K  E+  K +  Q+    Q+ +
Sbjct: 1568 KKTEEMLSVTFQVIFNESISDFSTSTADFTTFVQKEWEKRREILQKDVEEQVAQSHQKQL 1627

Query: 212  KN 217
             N
Sbjct: 1628 DN 1629


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 247 TVVNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVL 426
           T++++ L   ESKI+ L +   +  +V QYV     + F E     + +    + LCK L
Sbjct: 574 TMIDSSLQLLESKISDLKVRLALIDLVSQYV-----ILFYEPDFDSIFLRRVLIILCKKL 628

Query: 427 Q 429
           Q
Sbjct: 629 Q 629


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 35  KFQSSENMATVKFAVIDVSDFLTKKQASEPALAADWAKLE-ELYNKKLWHQLTLKLQEFV 211
           K  SS ++A    +  +  DF+ KK  +E      WA+++  LY + ++    L L +++
Sbjct: 571 KLVSSFSIANRPISNGEYLDFINKKSKTERVYPKQWAEIDGTLYIRTMYG--LLPLDDYL 628

Query: 212 KNPALQRGDNL 244
             P +   D+L
Sbjct: 629 GWPVMTSYDDL 639


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 419 LQRASASSFILTFVSTFSRNVTASLLLTYC 330
           LQR  A  F++  V+ +S N    L L YC
Sbjct: 342 LQRLQACPFVVNLVNVWSYNDNIFLQLDYC 371


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 253 VNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQG 432
           + N+L+     I     V I    VE    +RD VTF   +E  V  + +A   C + + 
Sbjct: 65  MENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCLIHKM 124

Query: 433 QIYIEQLND 459
            +  E L D
Sbjct: 125 DLVQEDLRD 133


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 716 KSYTSGASTPERASLKAISARSVAGRAS---PPSAQPTYRSCAVVTAS 582
           K  T+  STP R   KAIS  S++   S     ++ P  +S A VTA+
Sbjct: 148 KKSTTIRSTPVREPTKAISVASMSTSPSNYASRASSPDMKSSAAVTAN 195


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 147 FAQSAAKAGSLACFLVKKSLTSITANLTVAMFSEL 43
           F+Q +   G L CF+ KK + ++T N  + +F  L
Sbjct: 724 FSQISFLCGFLNCFIQKKGIHNVTPN-NLVIFKNL 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,462
Number of Sequences: 5004
Number of extensions: 59720
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)