Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1357
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596... 63 3e-10
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971... 60 2e-09
09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129... 29 3.0
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 3.0
01_01_0074 - 561304-562131,562219-562425,563034-563084,563310-56... 29 3.0
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 29 4.0
03_05_0711 + 27051991-27052368,27053032-27053265,27055429-270556... 29 4.0
02_05_0600 - 30273080-30274692,30274709-30274949 29 5.2
01_03_0194 + 13645418-13645790,13645879-13647653 28 6.9
>03_02_0154 +
5967512-5967658,5968206-5968652,5968766-5968846,
5969058-5969075,5969552-5969748,5969844-5969943,
5970676-5970861
Length = 391
Score = 62.9 bits (146), Expect = 3e-10
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +2
Query: 95 FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLSITF 265
F+ ++ + P LA +A L +LY +KLWHQLTLKL F++ PA Q GD LIQL F
Sbjct: 5 FVESQREARPELADPYADLADLYQRKLWHQLTLKLDHFLQLPAAQTGDTLIQLYNNF 61
Score = 52.0 bits (119), Expect = 5e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Frame = +1
Query: 256 NNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQ 435
NNF+T FE+KIN L L QY +K A++FLE V TK++ + +L +
Sbjct: 59 NNFITDFETKINLLKLAHFAVIASRQYPDKDAAISFLEGVITKLRETKDLRINEPILYVK 118
Query: 436 IYIEQLNDYDAAEKIIEHXXXXXXXXXXXXQFTDDSIS*PRN-ITESVVRLAVTTAQ--- 603
+ I +N +K + D ++ I+ + A+
Sbjct: 119 MQIAAINLEKGNQKECKKLLDEGKSTLDSMTDVDPTVHASLYWISSQYHKARQEFAEFYK 178
Query: 604 --LRYVGCADGGEALPATERADIAFRLALSGVLAPDVYDLGELLAH 735
L Y+ E+L + + D+AF L+L+ +L ++Y+ GELLAH
Sbjct: 179 NALLYLAYTT-VESLSESFKLDLAFDLSLAALLGDNIYNFGELLAH 223
>01_05_0085 -
17995800-17995985,17996724-17996823,17996919-17997115,
17997836-17997916,17998046-17998492,17998774-17998920
Length = 385
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = +2
Query: 95 FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLSITF 265
++ ++ + P LA +A L +LY +KLWHQLTLKL F++ PA Q GD +IQL F
Sbjct: 5 YVEAQRQARPDLADAYADLADLYQRKLWHQLTLKLDHFLQLPAAQTGDTIIQLYNNF 61
Score = 50.8 bits (116), Expect = 1e-06
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 6/166 (3%)
Frame = +1
Query: 256 NNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKV-----ETKVKMNDEALALCK 420
NNF++ FE+KIN L L QY +K A++FLE V ET+ + DE + K
Sbjct: 59 NNFISDFETKINLLKLAHFAVIASRQYPDKDAAISFLEGVTAKLRETRERRIDEPVLYVK 118
Query: 421 VLQGQIYIEQLNDYDAAEKIIEHXXXXXXXXXXXXQFTDDSIS-*PRNITESVVRLAVTT 597
+ I +E+ D +K+++ S ++ A
Sbjct: 119 MQIAAINLEK-GDQKECKKLLDEGKSTLDSMTDVDPTVHASFYWISSQYHKACQEFAEFY 177
Query: 598 AQLRYVGCADGGEALPATERADIAFRLALSGVLAPDVYDLGELLAH 735
E+L + + D+AF L+L+ +L ++Y+ GELLAH
Sbjct: 178 KNALLYLAYTTVESLSESFKLDLAFDLSLAALLGDNIYNFGELLAH 223
>09_02_0622 -
11310941-11311472,11312776-11312813,11312875-11312926,
11313891-11314270
Length = 333
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 529 FTDDSIS*PRNITESVVRLAVTTAQLRY-VGCADGGEALPATERADIAF 672
++DD I PR++ + + + T+ L V A G+ P TERA F
Sbjct: 189 YSDDHIRVPRDVLRTAITTSATSVHLNITVHAASVGQLPPPTERAYFHF 237
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = -1
Query: 731 ANNSPKSYTSGASTPERASLKAIS----ARSVAGRASPPSAQPTYRS 603
A +SP S +S +STP R ++ A S R GRA P P+ RS
Sbjct: 112 APSSPSSSSSSSSTPVRDAVAAESQSAPRRLAGGRAPPDGLWPSMRS 158
>01_01_0074 -
561304-562131,562219-562425,563034-563084,563310-563408,
564476-564622,564750-564851,565713-565928,566061-566192,
566249-566310,567618-567746,568426-568567,568735-568830,
568924-569000,569070-569148,569229-569297,569589-569703,
570614-570777,570847-571002
Length = 956
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 14 LHSITNSKFQSSENMATVKFAVIDVSDFLTKKQASEPALAADWAKLEELYNKKLWHQLTL 193
+ + F+ S N + K A + +D L K+ ASE W + N KL H L L
Sbjct: 270 IRELDTLSFELSINRCSEKLANL-ANDILLKESASEDQKTNTWNQTGPQNNLKLQHSLAL 328
Query: 194 KLQ 202
Q
Sbjct: 329 PAQ 331
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/93 (22%), Positives = 40/93 (43%)
Frame = +1
Query: 211 QESGSAEGRQPHTVVNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVK 390
+E +AE R T++ T + + + + E V VT E V+ +
Sbjct: 1302 EEIATAEARDEKTMITEE-TAQDPMVEDEKTMTTEETVQEPMVEDEKTVTTEETVQDPMV 1360
Query: 391 MNDEALALCKVLQGQIYIEQLNDYDAAEKIIEH 489
++D+ + K +Q + E + AAE+ +EH
Sbjct: 1361 VDDKTMTTEKTVQDSMVEEGGTNIAAAEETVEH 1393
>03_05_0711 +
27051991-27052368,27053032-27053265,27055429-27055687,
27055956-27056149
Length = 354
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 187 DFKTARIRQESGSAEGRQPHTVVNNFLTTFESKINPLSLVEIIAH-IVEQYVNKRDAVTF 363
D +T + E+ S R+ H+ + L F+ NPL ++++ + + R A
Sbjct: 247 DSRTFNAKLEAASDSIRKQHSDLK--LVVFDI-YNPL--LDLVTNPTAAGFFESRRACCG 301
Query: 364 LEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKII 483
+ET V N A+ C G ++ + + DAA K++
Sbjct: 302 TGTIETSVLCNQGAVGTCANATGYVFWDGFHPTDAANKVL 341
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 584 WPLLPRSFGTLAAPTGVRPYLPRNVLISPSD*LSLECWLRT 706
WPL R + + ++PTG+ P V + L CW T
Sbjct: 466 WPLCRRCWASTSSPTGLPSPPPTGVSACTAGLLCRRCWAST 506
>01_03_0194 + 13645418-13645790,13645879-13647653
Length = 715
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 630 PVGAANVPKLRGSNGQSDHGLCNIPRLTYR 541
PV AA + L+GSNGQ +G+ ++ + R
Sbjct: 492 PVKAALINSLKGSNGQLSNGIASLQKCHLR 521
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,215,995
Number of Sequences: 37544
Number of extensions: 393601
Number of successful extensions: 1140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -