Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1357
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        34   0.11 
SB_10361| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)       30   2.3  
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       29   5.4  
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)                    28   7.1  
SB_56271| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
 Frame = +1

Query: 196 TARIRQESGSAEGRQPHTVVNNFLTTFESKINPLSLV-EIIAHIVEQYVNKRDAVTFLEK 372
           T R+  + GS++ + P  ++   L+  ++ + P S++ ++I+   EQ V+K+   +  E+
Sbjct: 40  TNRLHNKIGSSQAKWP--ILVRLLSDCQTLVRPPSIMSKVISSSHEQVVSKKVITSSHEQ 97

Query: 373 VETKVKMNDEALALCKVLQGQIYIEQL 453
           V T  +  D+A+   KVL+  +  E L
Sbjct: 98  VITLKREYDDAVVAKKVLESLLSAEHL 124


>SB_10361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +1

Query: 193 KTARIRQESGSAEGRQPHTVVNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEK 372
           +T  +R  S S      HT  NN + T ++  N +  +++I H V+++   R  +  L K
Sbjct: 58  RTVNLRIASESVISSGDHTSSNNHIATEKTVFNQVKRLQVIVHFVDKF---RPVIRRLSK 114

Query: 373 VETKVKMNDEALALCKV 423
             T +K N+    L KV
Sbjct: 115 -WTMIKQNETIFDLEKV 130


>SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)
          Length = 628

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 113 ASEPALAADWAK----LEELYNKKLWHQLTLKLQEFVKNPALQR 232
           +SE A   +W+K    L E +NK LW +++ +  EF K+ A+ R
Sbjct: 525 SSEKAALKNWSKADVALYEYFNKTLWQRISYEEPEFSKDLAVFR 568


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 376 ETKVKMNDEALALCKVLQGQIY 441
           +T++++N+E +  CK+L G +Y
Sbjct: 758 QTRIRINEEVVLACKLLNGHLY 779


>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
          Length = 436

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +2

Query: 32  SKFQSSENMATVKFAVIDVSDFLTKKQASEPALAADWAKLEELYNKKLWHQL 187
           SK   S N  T     I  +  L KKQ  E A      KL +LY  +LWHQ+
Sbjct: 22  SKKLLSANSTTTHSKKISKATSLKKKQEEERAAKERQEKLLKLY--ELWHQV 71


>SB_56271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 589 VTTAQLRYVGCADGGEALPATERADIAFR 675
           +TT +L+ + C  GGE L   E  D+A R
Sbjct: 316 ITTLELKDLACRSGGEDLQYPEGRDLAVR 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,047,121
Number of Sequences: 59808
Number of extensions: 444603
Number of successful extensions: 1262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)