Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1356
         (828 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    23   3.0  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   3.0  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   3.0  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 501 GIVLITVLFNITSQYMHYFMHHTAL 427
           G+V++    NIT++     MHH AL
Sbjct: 26  GMVVVFAPANITTEVKSVEMHHEAL 50


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 469 YFSIYALFYASYGFNCEMMML 407
           YF +Y LF+ ++ F   + ML
Sbjct: 152 YFQMYVLFFVNFAFFVVVKML 172


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 469 YFSIYALFYASYGFNCEMMML 407
           YF +Y LF+ ++ F   + ML
Sbjct: 152 YFQMYVLFFVNFAFFVVVKML 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,329
Number of Sequences: 336
Number of extensions: 3445
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)