Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1356
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0709 - 5821246-5821449,5821517-5821634,5821720-5821812,582...    29   4.5  
01_06_0262 + 27989325-27990443                                         29   6.0  
01_06_0079 + 26242698-26242983,26243056-26243307,26245012-26245037     28   7.9  

>11_01_0709 -
           5821246-5821449,5821517-5821634,5821720-5821812,
           5822065-5822198,5822281-5822559,5822645-5822730,
           5822814-5822906,5822998-5823090,5823192-5823299,
           5824034-5824060,5824538-5824766
          Length = 487

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 493 HYSRTKVFGN*SICSTALSVRLKNKLIN*LPLFSHVDVYHRLPV 624
           H +RT +    S+CS  L+   K+  IN LPL   + V H++PV
Sbjct: 335 HANRTHLPYGWSMCSDVLNYSNKDGNINILPLLQRI-VEHKIPV 377


>01_06_0262 + 27989325-27990443
          Length = 372

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 748 IALFSVLLALRSNTA*EQDGSSQSQTTFTGFVL 650
           + L SVL+ALRS+ + EQ G       F GF +
Sbjct: 152 LTLSSVLIALRSSDSGEQPGGGSRARYFVGFAV 184


>01_06_0079 + 26242698-26242983,26243056-26243307,26245012-26245037
          Length = 187

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 196 FLVWSGSRGPPLWPLFGST 252
           FL  + SR PPLWP +G T
Sbjct: 58  FLYGNESRRPPLWPPYGET 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,457,320
Number of Sequences: 37544
Number of extensions: 313456
Number of successful extensions: 659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)