Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1356
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear horm...    29   4.1  
Z81586-7|CAB04693.1|  359|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 587 YFRMWTS-TIDYRCKLGCDCVSKNETRKCCLTLTRSVLLSRCI-TAKCEQD 733
           +FR   S  I Y CK   DC+S  E R  C    R+    RCI TA   +D
Sbjct: 37  FFRRTVSLNISYLCKRDSDCISSPELRSIC----RACRYQRCIDTAGMSRD 83


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 284 CSFSCYKLCCSVLPNKGQSGGPRLPDHT 201
           C  +C   C S+ P++   G P+LP  T
Sbjct: 184 CDATCQNTCSSMCPSQSPQGSPQLPTQT 211


>AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 274 protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 575 IDCLYF--RMWTSTIDYRCKLGCDCVSKNETRKCCLTLTRSVLLSRCIT 715
           + C+ F  R  T+ + Y+C  G  CV  NE+R  C    R   L +C T
Sbjct: 54  LGCIVFFRRAVTNEVTYKCLKGGTCVITNESRCIC----RYCRLQKCYT 98


>Z81586-7|CAB04693.1|  359|Caenorhabditis elegans Hypothetical
           protein T05F1.9 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 599 WTSTIDYRCKLGCDCVSKNETRKCC 673
           W +T D   KL C+C   NET   C
Sbjct: 210 WFTTSDLLTKLDCECAQLNETNLDC 234


>U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical
           protein C03G6.12 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/52 (28%), Positives = 18/52 (34%)
 Frame = +2

Query: 593 RMWTSTIDYRCKLGCDCVSKNETRKCCLTLTRSVLLSRCITAKCEQDGK*CD 748
           RMW S I   C L   C   N      L+  R+    RC+          CD
Sbjct: 88  RMWLSKIKEMCPLNNKCFDFNRRINMSLSKCRACRFQRCLNVGMNPAAIQCD 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,910,755
Number of Sequences: 27780
Number of extensions: 304101
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)