Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1356
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 629 LGCDCVSKNETRKCC 673
           +GC+C + N   KCC
Sbjct: 433 IGCECKTCNSKTKCC 447


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 223 PPLWPLFGSTEQ 258
           PPL P FGST Q
Sbjct: 178 PPLNPRFGSTHQ 189


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 223 PPLWPLFGSTEQ 258
           PPL P FGST Q
Sbjct: 178 PPLNPRFGSTHQ 189


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 625 TPVIYGRRPHA 593
           TPV+Y + PHA
Sbjct: 507 TPVVYKKTPHA 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,121
Number of Sequences: 438
Number of extensions: 3703
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)