Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1354
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    54   2e-08
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex...    35   0.013
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    29   0.84 
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    29   1.1  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.0  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   3.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   4.5  

>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 28/83 (33%), Positives = 38/83 (45%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPXXXXXXXXXXXXXXXXXXXXXM 181
           FST DC++  +R+KEDPWN+I++G  TGG LA R G                        
Sbjct: 73  FSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAIGCACILAVFEGLGIA 132

Query: 182 FTRLTAEQFKPQQPIFEDPSILG 250
             R+ AE  +P  P+  D    G
Sbjct: 133 LGRMNAEYNRPVAPVIPDAPASG 155


>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
           subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 109
           +S  +C +   R K D +N+I +G  TGG LA R+G
Sbjct: 114 YSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSG 149


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 741 SILVEIFQTRYTSCLISLISKHYLLSLFQIYNYG 640
           +I++EIF  R+ S  IS   KHYLL L  +  YG
Sbjct: 153 NIIMEIFANRFNSTHISPGMKHYLL-LLSVSFYG 185


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV 112
           ++ I+  + Y RQK    NS+ +GALTG +  +  G+
Sbjct: 145 YNGINSLIGYKRQKHGWENSVAAGALTGALYKSTRGL 181


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 48  IHGIPL*VEPSRGVSWLQEMVYRQWQEVHLLEEFS 152
           I  I +  +PSRG +W Q ++  Q +E+HL  E S
Sbjct: 259 IDEIQMMADPSRGYAWTQCLLGLQAKEIHLCGEES 293


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 177  IPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRAP 70
            +P PS+    +PP S  P +   P  +A +PPV  P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPV---PTPSAGLPPVPVP 1232


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 151 ENSSNKCTSCHCRYTISCSQDTPRE--GSTHNGIPWIFLLPHVH 26
           +N   K    HC   + C ++ P E  GS H   P +F++PH H
Sbjct: 133 KNCLQKWLENHCTCPL-CRKEVPHETVGSAHP--PILFIIPHSH 173


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 200 EQFKPQQPIFEDPSILGQIKDRLSLTNRL 286
           ++F+P  P++EDP+I   I   L+ TN +
Sbjct: 282 DRFQPAFPLYEDPAIQKFIISYLNATNTI 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,576,959
Number of Sequences: 5004
Number of extensions: 74226
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)