BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1354 (858 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 54 2e-08 SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex... 35 0.013 SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 29 0.84 SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 29 1.1 SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 29 1.1 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.0 SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 3.4 SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 4.5 >SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Schizosaccharomyces pombe|chr 1|||Manual Length = 164 Score = 54.4 bits (125), Expect = 2e-08 Identities = 28/83 (33%), Positives = 38/83 (45%) Frame = +2 Query: 2 FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPXXXXXXXXXXXXXXXXXXXXXM 181 FST DC++ +R+KEDPWN+I++G TGG LA R G Sbjct: 73 FSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAIGCACILAVFEGLGIA 132 Query: 182 FTRLTAEQFKPQQPIFEDPSILG 250 R+ AE +P P+ D G Sbjct: 133 LGRMNAEYNRPVAPVIPDAPASG 155 >SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual Length = 175 Score = 35.1 bits (77), Expect = 0.013 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +2 Query: 2 FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 109 +S +C + R K D +N+I +G TGG LA R+G Sbjct: 114 YSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSG 149 >SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces pombe|chr 2|||Manual Length = 409 Score = 29.1 bits (62), Expect = 0.84 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = -1 Query: 741 SILVEIFQTRYTSCLISLISKHYLLSLFQIYNYG 640 +I++EIF R+ S IS KHYLL L + YG Sbjct: 153 NIIMEIFANRFNSTHISPGMKHYLL-LLSVSFYG 185 >SPCC16A11.09c |tim23||mitochondrial inner membrane presequence translocase complex subunit Tim23|Schizosaccharomyces pombe|chr 3|||Manual Length = 210 Score = 28.7 bits (61), Expect = 1.1 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 2 FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV 112 ++ I+ + Y RQK NS+ +GALTG + + G+ Sbjct: 145 YNGINSLIGYKRQKHGWENSVAAGALTGALYKSTRGL 181 >SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharomyces pombe|chr 1|||Manual Length = 647 Score = 28.7 bits (61), Expect = 1.1 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 48 IHGIPL*VEPSRGVSWLQEMVYRQWQEVHLLEEFS 152 I I + +PSRG +W Q ++ Q +E+HL E S Sbjct: 259 IDEIQMMADPSRGYAWTQCLLGLQAKEIHLCGEES 293 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 27.9 bits (59), Expect = 2.0 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -1 Query: 177 IPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRAP 70 +P PS+ +PP S P + P +A +PPV P Sbjct: 1200 VPKPSVGVPPVPPPSTAPPV---PTPSAGLPPVPVP 1232 >SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pombe|chr 2|||Manual Length = 741 Score = 27.1 bits (57), Expect = 3.4 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -3 Query: 151 ENSSNKCTSCHCRYTISCSQDTPRE--GSTHNGIPWIFLLPHVH 26 +N K HC + C ++ P E GS H P +F++PH H Sbjct: 133 KNCLQKWLENHCTCPL-CRKEVPHETVGSAHP--PILFIIPHSH 173 >SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1717 Score = 26.6 bits (56), Expect = 4.5 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 200 EQFKPQQPIFEDPSILGQIKDRLSLTNRL 286 ++F+P P++EDP+I I L+ TN + Sbjct: 282 DRFQPAFPLYEDPAIQKFIISYLNATNTI 310 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,576,959 Number of Sequences: 5004 Number of extensions: 74226 Number of successful extensions: 189 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 189 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 426466470 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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