Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1354
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 61 1e-09
03_04_0070 + 17042509-17043129 57 2e-08
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 33 0.39
01_06_1476 + 37640278-37642551 31 1.2
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 30 2.1
07_01_0310 + 2209084-2209554 30 2.1
12_01_0231 + 1744323-1745276,1745516-1746193 30 2.7
11_01_0234 + 1804581-1805357,1805941-1806447 30 2.7
07_01_0312 + 2214050-2214556 30 2.7
03_04_0072 + 17054137-17054499 29 3.6
01_03_0204 + 13771346-13772680 29 3.6
12_01_0120 + 912312-912615,913145-913371,913507-913754,914293-91... 29 6.3
07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786 29 6.3
03_06_0189 + 32214702-32215154 29 6.3
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 60.9 bits (141), Expect = 1e-09
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +2
Query: 2 FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 109
FS DC++V+MRQKEDPWNSI++GA TGG L+ R G
Sbjct: 73 FSAFDCTMVFMRQKEDPWNSIIAGAATGGFLSMRQG 108
Score = 59.3 bits (137), Expect = 4e-09
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +2
Query: 2 FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV 112
FS DC+LV +RQKEDP+NSI++GA TGGILAAR G+
Sbjct: 297 FSACDCALVSVRQKEDPYNSIIAGAATGGILAARQGL 333
>03_04_0070 + 17042509-17043129
Length = 206
Score = 57.2 bits (132), Expect = 2e-08
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +2
Query: 2 FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 109
FS DC++V+ RQKEDPWNSI++GA TG +L+ R G
Sbjct: 71 FSAFDCAMVHARQKEDPWNSILAGAATGAVLSLRQG 106
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 32.7 bits (71), Expect = 0.39
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -1
Query: 171 MPSIRAKRIPPISALPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMV 7
+P + R P + LP+++G P + +PP+ P+ M+ GSS +M Q ++
Sbjct: 558 LPHAQGSRAP-LPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQMPQHLI 611
>01_06_1476 + 37640278-37642551
Length = 757
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 103 SCSQDTPREGSTHNGIPWI 47
S D PR G+ HNGIPW+
Sbjct: 320 SAGNDGPRLGTLHNGIPWL 338
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -1
Query: 90 IPPVRA-PLIMEFHGSSFC 37
IPPVR P+++ FHG SFC
Sbjct: 463 IPPVRRLPIVVYFHGGSFC 481
>07_01_0310 + 2209084-2209554
Length = 156
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 207 NCSAVNLVNMIPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRA 73
+C A L+ P++ A +PP+ A+PAI AA +PP+ A
Sbjct: 10 SCQAARLLADATPPAVPAVTLPPMPAIPAIP-----AATLPPIPA 49
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 174 PMPSIRAKRIPPISALPAIAGTPFLAARIPPVRA 73
PMP++ +PP+ A+PA+ P A +PP+ A
Sbjct: 60 PMPAVPKVALPPMPAVPAVPTVP--AVALPPMPA 91
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 198 AVNLVNMIPMPSIRAKRIPPISALPAI--AGTPFLAARIPPVRAP 70
AV L M +P+I A +PPI A+P + A P + A +P V P
Sbjct: 27 AVTLPPMPAIPAIPAATLPPIPAVPTVPNAALPPMPA-VPKVALP 70
>12_01_0231 + 1744323-1745276,1745516-1746193
Length = 543
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 105 FLAARIPPVRAPLIMEFHGSSFCLMYTS 22
+L P R P+++ FHG FCL + +
Sbjct: 83 YLTTTTPAGRRPVLVHFHGGGFCLSHAA 110
>11_01_0234 + 1804581-1805357,1805941-1806447
Length = 427
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 105 FLAARIPPVRAPLIMEFHGSSFCLMYTS 22
+L P R P+++ FHG FCL + +
Sbjct: 83 YLTTTAPARRRPVLVHFHGGGFCLSHAA 110
>07_01_0312 + 2214050-2214556
Length = 168
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -1
Query: 174 PMPSIRAKRIPPISALPAIAGTPFL----AARIPPVRA 73
PMP++ +PP+ A+PA+ P + AA +PP+ A
Sbjct: 80 PMPAVPKVALPPMPAVPAVPTVPAVPAVPAASLPPMPA 117
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -1
Query: 177 IPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRA 73
+P+P++ A +PP+ A+PA+ AA +PP+ A
Sbjct: 40 VPVPTVPAVTLPPMPAIPAVP-----AATLPPMPA 69
>03_04_0072 + 17054137-17054499
Length = 120
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 41 KEDPWNSIMSGALTGGILAARNG 109
KE+ WN + +GA T G L R G
Sbjct: 8 KEESWNFVFAGAATSGFLRLRQG 30
>01_03_0204 + 13771346-13772680
Length = 444
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = -1
Query: 204 CSAVNLVNMIPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRAPLIMEFHGSSF 40
CS+ ++ PS IP LP A T LA I P PLI + SSF
Sbjct: 131 CSSTKRCRLVDQPS--TSHIPHQHLLPQFAPTYTLAIPITPSLMPLISQCTPSSF 183
>12_01_0120 +
912312-912615,913145-913371,913507-913754,914293-914656,
914758-915154,915671-915693,916645-916987,917513-917532,
918418-918527,919484-920255
Length = 935
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 431 RYARKFLDVIILNQAL*TTGK 493
R + F+D+I+ NQAL TTGK
Sbjct: 850 RICKMFIDLIVSNQALETTGK 870
>07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786
Length = 273
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 192 NLVNMIPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRAP 70
+L + P+P+I+ +P + LP I G P L +P ++ P
Sbjct: 82 SLPQLPPLPTIQIPGLPTLPQLPTIPGLPQLPT-LPTIQIP 121
>03_06_0189 + 32214702-32215154
Length = 150
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 198 AVNLVNMIPMPSIRAKRIPP----ISALPAIAGTPFLAARIPPVRAPL 67
AV V++ PMP++ A +PP I A+PA+ P IP V P+
Sbjct: 96 AVPKVSLPPMPAVPAVTLPPMPAGIPAVPAVTLPPM--PSIPTVNVPM 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,614,591
Number of Sequences: 37544
Number of extensions: 430020
Number of successful extensions: 1193
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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