Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1354
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40700| Best HMM Match : Tim17 (HMM E-Value=6.8005e-42)              68   1e-11
SB_17409| Best HMM Match : FlgM (HMM E-Value=1.2e-23)                  29   6.4  
SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)             28   8.5  

>SB_40700| Best HMM Match : Tim17 (HMM E-Value=6.8005e-42)
          Length = 289

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 34/71 (47%), Positives = 39/71 (54%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPXXXXXXXXXXXXXXXXXXXXXM 181
           FST DC L+ +R KEDPWNSI SGA+TG +LAAR G                        
Sbjct: 179 FSTFDCCLMGLRGKEDPWNSIGSGAITGAVLAARGGPSAAMRSAAIGAVLLALIEGVGIC 238

Query: 182 FTRLTAEQFKP 214
            TR+TAEQFKP
Sbjct: 239 ITRMTAEQFKP 249


>SB_17409| Best HMM Match : FlgM (HMM E-Value=1.2e-23)
          Length = 180

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 440 VHTSSYQPDTDRLYSILTDLNFSLSRFVCY 351
           +   SYQ D+ R+ S L  LNF   R+VCY
Sbjct: 91  IEDGSYQVDSQRVASKL--LNFESQRYVCY 118


>SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)
          Length = 454

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 94  GCKKWCTGN--GRK-CTYWRNSLSSNRRHWYHVHKING*TV 207
           G K + TG   GRK C Y+ N    NRRH     +IN  T+
Sbjct: 400 GIKNFNTGKTRGRKLCPYYSNDALCNRRHLTDSDEINNKTI 440


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,757,490
Number of Sequences: 59808
Number of extensions: 515813
Number of successful extensions: 1354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)