Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1354
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-6|AAB92039.1|  181|Caenorhabditis elegans Hypothetical ...    59   5e-09
U40800-15|AAA81499.1|  158|Caenorhabditis elegans Hypothetical p...    48   6e-06
Z49125-3|CAB97233.1|  213|Caenorhabditis elegans Hypothetical pr...    33   0.20 
Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical p...    30   2.4  
AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine r...    28   7.4  
U80029-8|ABC71800.1|  166|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AC006675-8|AAK84554.1|  414|Caenorhabditis elegans Hypothetical ...    28   9.8  

>AF038611-6|AAB92039.1|  181|Caenorhabditis elegans Hypothetical
           protein E04A4.5 protein.
          Length = 181

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 35/87 (40%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPXXXXXXXXXXXXXXXXXXXXXM 181
           FSTIDC LV +R+KEDP NSI+SG LTG +LA R+G                       +
Sbjct: 71  FSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGSVILAMIEGVGLV 130

Query: 182 FTRLTAEQFKPQQP---IFEDPSILGQ 253
            TR       P QP     +DP  LGQ
Sbjct: 131 TTRWMGAMMDPTQPPPEALDDPRSLGQ 157


>U40800-15|AAA81499.1|  158|Caenorhabditis elegans Hypothetical
           protein D2096.1 protein.
          Length = 158

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARN 106
           FSTIDC LV  R+KED  NSI+SG LTG +LA R+
Sbjct: 17  FSTIDCCLVANRKKEDSINSIVSGGLTGALLAIRS 51


>Z49125-3|CAB97233.1|  213|Caenorhabditis elegans Hypothetical
           protein C47G2.3 protein.
          Length = 213

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV 112
           FS  +C+L  +R K D  N   SG + GG+L  R G+
Sbjct: 154 FSGTECALETIRAKSDWRNGTYSGGIVGGLLGLRAGI 190


>Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical
           protein T06E4.12 protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 180 MIPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRAPLI 64
           + P P + A  IP  +  P IA  P LAA   P  AP +
Sbjct: 163 LAPRPVLAAPAIPAFAPAPIIAPRPVLAAPAIPAFAPAV 201



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 180 MIPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRAP 70
           + P P + A  IP  +  P +A  P LAA   P  AP
Sbjct: 143 LAPRPVLAAPAIPAFAPAPLLAPRPVLAAPAIPAFAP 179


>AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein47 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 518 ILAILKQAKRNNIIIYLVCFSIIFTVGKIHKNTVPYIMPFQP 643
           +L I K  K NN   +++ F +  T+  +H N +    P  P
Sbjct: 31  LLIIFKSYKFNNFRFFVLVFQVTCTITDLHLNFIMQPAPLMP 72


>U80029-8|ABC71800.1|  166|Caenorhabditis elegans Hypothetical
           protein T20D4.20 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 807 CCDETENTQEKDNSLCNTCREGSILVEIFQTRYTSCLISL 688
           C D  E  +E+DNS     RE   ++    T +  CL  L
Sbjct: 52  CLDLVECEKEQDNSTGKQVRESCEIMNFLSTDFNPCLAKL 91


>AC006675-8|AAK84554.1|  414|Caenorhabditis elegans Hypothetical
           protein M02H5.4 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 427 LEVCTKVS*CNYFKSGFVDYRKINMKTYF 513
           L+ C K + C+++K+G+V  +K  +K  F
Sbjct: 55  LKPCKKNNVCDFYKNGYVSCKKCRLKKCF 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,621,984
Number of Sequences: 27780
Number of extensions: 413862
Number of successful extensions: 1213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)