Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1354
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   3.6  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   8.3  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = -1

Query: 210 LNCSAVNLVNMIP--MPSIRAKRIP-PISALPAIAGTPFLAA---RIPPV-RAPLIMEFH 52
           L C  +N V ++   +PS   +++   ISAL  ++ T FL      +PP  + PLI  ++
Sbjct: 222 LPCILINSVALLVFYVPSESGEKVTLGISAL--LSMTVFLMTIRESLPPTEKTPLISLYY 279

Query: 51  GSSFCLM 31
           G S CL+
Sbjct: 280 GVSICLV 286


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 127 KCTYWRNSLSSNRRHWYHVHKI 192
           +  YWR  +  N  HW H H +
Sbjct: 195 RVAYWREDIGINLHHW-HWHLV 215


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 729 QPKCCPPYRCCINCYLSLE-YFQFHH 803
           +P+ CP  R   +CY SL+ +FQ  H
Sbjct: 4   EPQECPYCRRNFSCYYSLKRHFQDKH 29


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 828 ISVLPKNCCDETENTQEKDNSLCNTCREGSILVEIFQ 718
           ++ L  NC D TE+   K +S    C   + L++IF+
Sbjct: 96  VNRLVNNCKDITESNSCKKSSKLLQCFIDNNLMKIFE 132


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 55  EFHYEWSPHGGYPGCKKWCTGNG 123
           E H EW  +   PG  KW   +G
Sbjct: 558 ENHIEWFDYAFIPGNLKWLDIHG 580


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 64  NGIPWIFLLPHVHK*AVYG 8
           NGIPW+ +L H  +  ++G
Sbjct: 85  NGIPWV-ILGHSERRNIFG 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,341
Number of Sequences: 438
Number of extensions: 5715
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)