Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1354
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37410.2 68415.m04588 mitochondrial import inner membrane tra...    67   2e-11
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra...    67   2e-11
At1g20350.1 68414.m02539 mitochondrial import inner membrane tra...    64   2e-10
At5g11690.1 68418.m01366 mitochondrial import inner membrane tra...    54   9e-08
At1g17530.1 68414.m02155 mitochondrial import inner membrane tra...    31   0.74 
At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin...    30   2.3  
At5g51150.1 68418.m06342 expressed protein similar to unknown pr...    28   9.1  
At2g25565.1 68415.m03060 hypothetical protein                          28   9.1  
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ...    28   9.1  

>At2g37410.2 68415.m04588 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 33/83 (39%), Positives = 44/83 (53%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPXXXXXXXXXXXXXXXXXXXXXM 181
           FST DC++VY+RQKEDPWNSI++GA TGG L+ R G                       M
Sbjct: 73  FSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLALIEGAGIM 132

Query: 182 FTRLTAEQFKPQQPIFEDPSILG 250
             ++ A+   PQ  + EDP + G
Sbjct: 133 LNKVLAQ---PQNMMMEDPGMQG 152


>At2g37410.1 68415.m04587 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 33/83 (39%), Positives = 44/83 (53%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPXXXXXXXXXXXXXXXXXXXXXM 181
           FST DC++VY+RQKEDPWNSI++GA TGG L+ R G                       M
Sbjct: 73  FSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLALIEGAGIM 132

Query: 182 FTRLTAEQFKPQQPIFEDPSILG 250
             ++ A+   PQ  + EDP + G
Sbjct: 133 LNKVLAQ---PQNMMMEDPGMQG 152


>At1g20350.1 68414.m02539 mitochondrial import inner membrane
           translocase subunit Tim17, putative similar to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}; contains Pfam profile
           PF02466: Mitochondrial import inner membrane translocase
           subunit Tim17
          Length = 218

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 26/37 (70%), Positives = 31/37 (83%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV 112
           +ST DC+LVY RQKEDPWNSI+SGA TGG L+ R G+
Sbjct: 73  YSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGL 109


>At5g11690.1 68418.m01366 mitochondrial import inner membrane
           translocase subunit Tim17, putative similar to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}; contains Pfam profile
           PF02466: Mitochondrial import inner membrane translocase
           subunit Tim17
          Length = 133

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 23/36 (63%), Positives = 30/36 (83%)
 Frame = +2

Query: 5   STIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV 112
           ST D +LV +R+KEDPWNSI++GA TGG+L+ R GV
Sbjct: 74  STFDYALVRIRKKEDPWNSIVAGAATGGVLSIRKGV 109


>At1g17530.1 68414.m02155 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains Pfam PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 187

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV 112
           ++ I+  +V +  K+D W S+++G  TG +  A  GV
Sbjct: 121 YAGIESGVVAVTDKDDVWTSVVAGLGTGAVFRAARGV 157


>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 344

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 108 PFLAARIPPVRAPLIMEFHGSSFCL 34
           P  AA  P V  PL++ FHG  FC+
Sbjct: 81  PDAAAASPSVTLPLLVYFHGGGFCV 105


>At5g51150.1 68418.m06342 expressed protein similar to unknown
           protein (gb|AAD46013.1)
          Length = 531

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 2   FSTIDCSLVYMRQKEDPWNSIMSGALTG-GILA 97
           +  + C L   R+KE P NS+++G++ G  ILA
Sbjct: 142 YHALRCCLRKWRKKETPLNSVLAGSVAGLSILA 174


>At2g25565.1 68415.m03060 hypothetical protein
          Length = 206

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 831 VISVLPKNCCDETENTQEKDNSLCNTCRE 745
           V SV+P +C  + E  + +D S C  C E
Sbjct: 127 VFSVIPVSCLPKEETQEVEDESTCPICLE 155


>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 499

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -1

Query: 822 VLPKNCCDETENTQEKDNSLCNTCREGS---ILVEIFQTRYTSCLISLISKHY---LLSL 661
           +LP   C+  E   + D S+CNT + G+     VE  Q  +  C+ S +  +Y   +   
Sbjct: 113 ILPLFWCNNKEADPKNDCSICNTRKVGTCYYFCVECDQRYHKECVESPLEINYPSHVKHS 172

Query: 660 FQIYN 646
            Q+YN
Sbjct: 173 LQLYN 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,080,461
Number of Sequences: 28952
Number of extensions: 367737
Number of successful extensions: 851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)