Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1352
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    26   5.3  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   5.3  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.3  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 520 WLQNRSDLANLEMSYHVVTLIALWDYRYVPTLS 422
           WL+++ D+ NLE++ ++V L  + D    P +S
Sbjct: 278 WLKSKGDMVNLEVARNMVRLKNISDDDLQPVVS 310


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 781 FHRRSLTTTSIKNRLSIKNRMFQNERTKI---TLSLVGSID 668
           FHR S+T+ SIK+R ++ +    + R  I    LSL G  D
Sbjct: 624 FHRSSVTSASIKSREAVLSAGNSSRRASIFLDQLSLHGDTD 664


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 569 SISIQMHLEDQSWADAVAPEQKRSSQFRDVLPRRHIDRFVGLS-VCPN 429
           S+S Q  ++  S  +   P  KR  Q    + RRH+D  +GLS +CP+
Sbjct: 582 SVSRQSIIQILSDVEPYEPFWKRIIQLD--ISRRHLDSLIGLSELCPS 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,514
Number of Sequences: 5004
Number of extensions: 51274
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)