Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1352
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819     29   5.5  
08_02_0991 - 23377621-23378364                                         28   9.7  
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405...    28   9.7  

>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
          Length = 451

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 475 HVVTLIALW-DYRYVPTLSG*KREKERASEIVVSGVGTWPSSTRGRVW 335
           H V ++A       +P     KRE++ +  IV   VG W  S  G+ W
Sbjct: 305 HAVVVVAEGAGQELIPRTDDQKREQDESGNIVFLDVGPWLKSELGKWW 352


>08_02_0991 - 23377621-23378364
          Length = 247

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 412 REKERASEIVVSGVGTWPSSTRG 344
           + K+R S ++ SGVGTW  S  G
Sbjct: 49  KAKQRLSSLLFSGVGTWRRSVDG 71


>06_03_0649 +
           23138442-23138842,23139576-23139849,23139929-23140562,
           23140771-23140826,23141178-23141282,23141295-23141535,
           23142686-23142690
          Length = 571

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 293 FNILLVNV*IRPLDPHPPSGRARPRPDATDHYLTRSLFL 409
           F+ +  N+   P+ P PPS    P P AT+   + ++ +
Sbjct: 163 FHFVGHNMGFNPISPQPPSAYGTPTPQATNQGTSTNIMI 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,763
Number of Sequences: 37544
Number of extensions: 339306
Number of successful extensions: 914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)