Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1352
         (786 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209311-1|BAD92548.1|  345|Homo sapiens nebulette non-muscle is...    32   2.0  
X04571-1|CAA28240.1| 1207|Homo sapiens protein ( Human mRNA for ...    31   6.2  
BC113461-1|AAI13462.1| 1207|Homo sapiens epidermal growth factor...    31   6.2  
BC093731-1|AAH93731.1| 1207|Homo sapiens epidermal growth factor...    31   6.2  
AY506357-1|AAR84237.1| 1152|Homo sapiens truncated epidermal gro...    31   6.2  

>AB209311-1|BAD92548.1|  345|Homo sapiens nebulette non-muscle
           isoform variant protein.
          Length = 345

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 23/75 (30%), Positives = 30/75 (40%)
 Frame = +2

Query: 332 DPHPPSGRARPRPDATDHYLTRSLFLSLSPTEGWDIPIIPQSDQCDDVVRHL*IG*IASV 511
           DP P S RARP P A      R+L    +PT  +  P       C + VR    G + + 
Sbjct: 2   DPAPASPRARPAPGARPRRPPRALTRGPAPTP-YPAPAARSPPACQEAVRGS-PGDVTAA 59

Query: 512 LEPQHQPTTDPPSAS 556
              Q  P   PP  +
Sbjct: 60  PGSQQPPPPPPPGTA 74


>X04571-1|CAA28240.1| 1207|Homo sapiens protein ( Human mRNA for
            kidney epidermal growth factor (EGF) precursor. ).
          Length = 1207

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 515  PEQKRSSQFRDVLPRRHIDRFVGLSVCPNPQWVKERERESE*DSGQ 378
            P+       RDV  RR  D   G+S CP P +V  +E +   + GQ
Sbjct: 1067 PKNPYEESSRDVRSRRPADTEDGMSSCPQPWFVVIKEHQDLKNGGQ 1112


>BC113461-1|AAI13462.1| 1207|Homo sapiens epidermal growth factor
            (beta-urogastrone) protein.
          Length = 1207

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 515  PEQKRSSQFRDVLPRRHIDRFVGLSVCPNPQWVKERERESE*DSGQ 378
            P+       RDV  RR  D   G+S CP P +V  +E +   + GQ
Sbjct: 1067 PKNPYEESSRDVRSRRPADTEDGMSSCPQPWFVVIKEHQDLKNGGQ 1112


>BC093731-1|AAH93731.1| 1207|Homo sapiens epidermal growth factor
            (beta-urogastrone) protein.
          Length = 1207

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 515  PEQKRSSQFRDVLPRRHIDRFVGLSVCPNPQWVKERERESE*DSGQ 378
            P+       RDV  RR  D   G+S CP P +V  +E +   + GQ
Sbjct: 1067 PKNPYEESSRDVRSRRPADTEDGMSSCPQPWFVVIKEHQDLKNGGQ 1112


>AY506357-1|AAR84237.1| 1152|Homo sapiens truncated epidermal growth
            factor (beta-urogastrone) protein.
          Length = 1152

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 515  PEQKRSSQFRDVLPRRHIDRFVGLSVCPNPQWVKERERESE*DSGQ 378
            P+       RDV  RR  D   G+S CP P +V  +E +   + GQ
Sbjct: 1067 PKNPYEESSRDVRSRRPADTEDGMSSCPQPWFVVIKEHQDLKNGGQ 1112


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,519,979
Number of Sequences: 237096
Number of extensions: 1806958
Number of successful extensions: 4286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4286
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)