Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1352
         (786 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071707-1|AAL49329.1| 1026|Drosophila melanogaster RH22885p pro...    31   1.8  
AE014298-2268|AAS65365.1| 1026|Drosophila melanogaster CG16952-P...    31   1.8  
AE014298-2267|AAS65364.1| 1026|Drosophila melanogaster CG16952-P...    31   1.8  
AE014298-2266|AAF48532.2| 1026|Drosophila melanogaster CG16952-P...    31   1.8  
AE014134-861|AAF52209.1|  600|Drosophila melanogaster CG9121-PA ...    30   4.1  

>AY071707-1|AAL49329.1| 1026|Drosophila melanogaster RH22885p
           protein.
          Length = 1026

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 506 SVLEPQHQPTTDPPSASGSICSFVRHTCINGRNIT-LGMSVSLCGED 643
           S+LE + Q    PP +  + CS  RHT +    ++ +G SV+ CG D
Sbjct: 776 SLLEDEDQ---SPPPSPAATCSVSRHTTVASSFLSPMGSSVASCGTD 819


>AE014298-2268|AAS65365.1| 1026|Drosophila melanogaster CG16952-PC,
           isoform C protein.
          Length = 1026

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 506 SVLEPQHQPTTDPPSASGSICSFVRHTCINGRNIT-LGMSVSLCGED 643
           S+LE + Q    PP +  + CS  RHT +    ++ +G SV+ CG D
Sbjct: 776 SLLEDEDQ---SPPPSPAATCSVSRHTTVASSFLSPMGSSVASCGTD 819


>AE014298-2267|AAS65364.1| 1026|Drosophila melanogaster CG16952-PB,
           isoform B protein.
          Length = 1026

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 506 SVLEPQHQPTTDPPSASGSICSFVRHTCINGRNIT-LGMSVSLCGED 643
           S+LE + Q    PP +  + CS  RHT +    ++ +G SV+ CG D
Sbjct: 776 SLLEDEDQ---SPPPSPAATCSVSRHTTVASSFLSPMGSSVASCGTD 819


>AE014298-2266|AAF48532.2| 1026|Drosophila melanogaster CG16952-PA,
           isoform A protein.
          Length = 1026

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 506 SVLEPQHQPTTDPPSASGSICSFVRHTCINGRNIT-LGMSVSLCGED 643
           S+LE + Q    PP +  + CS  RHT +    ++ +G SV+ CG D
Sbjct: 776 SLLEDEDQ---SPPPSPAATCSVSRHTTVASSFLSPMGSSVASCGTD 819


>AE014134-861|AAF52209.1|  600|Drosophila melanogaster CG9121-PA
           protein.
          Length = 600

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 595 WAQHYSRHVRILVR*RPITSRRFDNRCCPPMITLFLYVH 711
           W + +SR +R+L+   P     F + C P ++   +Y H
Sbjct: 392 WVKEFSRILRVLLAKSPSARNDFYDSCAPTIVCGLIYCH 430


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,907,091
Number of Sequences: 53049
Number of extensions: 577516
Number of successful extensions: 1173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)