Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1352
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 372 SGRGRARPEGGCGSRG 325
           +GRG+ R  G  GSRG
Sbjct: 78  TGRGKGRGHGKGGSRG 93


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 784 QFHRRSLTTTSIKNRLSI 731
           QFH + L  TS+K  L I
Sbjct: 799 QFHNKELLWTSVKKALMI 816


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 784 QFHRRSLTTTSIKNRLSI 731
           QFH + L  TS+K  L I
Sbjct: 837 QFHNKELLWTSVKKALMI 854


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = +3

Query: 546 QVHLDRYAHSYVI---RVSMGATLLSACPY 626
           ++H D     +V+    + +G T + ACPY
Sbjct: 132 RIHADSCDRLWVLDTGTIGIGNTTIQACPY 161


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 554 MHLEDQSWADAVAPEQKRSSQFRDVLPRRHIDRFVG 447
           +HLED    +    E +R S  R++  + ++  F+G
Sbjct: 847 LHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIG 882


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,553
Number of Sequences: 438
Number of extensions: 3747
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)