Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1351
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5I8 Cluster: DID protein; n=1; Bombyx mori|Rep: DID ...   184   1e-45
UniRef50_UPI0000D56D35 Cluster: PREDICTED: hypothetical protein;...    52   2e-05
UniRef50_Q6NP11 Cluster: LD12690p; n=4; Sophophora|Rep: LD12690p...    43   0.008
UniRef50_Q16LJ7 Cluster: Putative uncharacterized protein; n=1; ...    39   0.10 
UniRef50_Q0PNE2 Cluster: UPF0405 protein TMEM103; n=26; Euteleos...    37   0.55 
UniRef50_UPI0000E49288 Cluster: PREDICTED: hypothetical protein;...    35   1.7  
UniRef50_Q38DM1 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_Q5CT97 Cluster: Possible AAA domain containing protein;...    33   6.7  

>UniRef50_Q2F5I8 Cluster: DID protein; n=1; Bombyx mori|Rep: DID
           protein - Bombyx mori (Silk moth)
          Length = 245

 Score =  184 bits (449), Expect = 1e-45
 Identities = 84/85 (98%), Positives = 85/85 (100%)
 Frame = +3

Query: 252 IQKNISTNRIVVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGLRMNHN 431
           +QKNISTNRIVVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGLRMNHN
Sbjct: 11  LQKNISTNRIVVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGLRMNHN 70

Query: 432 LFKSCEAGVIDYFDFGDATLTNIME 506
           LFKSCEAGVIDYFDFGDATLTNIME
Sbjct: 71  LFKSCEAGVIDYFDFGDATLTNIME 95



 Score = 97.5 bits (232), Expect = 3e-19
 Identities = 49/55 (89%), Positives = 50/55 (90%)
 Frame = +2

Query: 485 NINKYNGVAESDQLLIDVLKKIEEMQRNHDTVNIIFDGITHLLDLQYTLPEVNKF 649
           NI +Y   AESDQLLIDVLKKIEEMQRNHDTVNIIFDGITHLLDLQYTL EVNKF
Sbjct: 92  NIMEY---AESDQLLIDVLKKIEEMQRNHDTVNIIFDGITHLLDLQYTLQEVNKF 143


>UniRef50_UPI0000D56D35 Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 235

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +3

Query: 270 TNRIV-VKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGLRMNHNLFKSC 446
           T+R++ +KE    D +F++  +I   + +N  L  V  HN++ HYHNVG R+ ++  K  
Sbjct: 32  TDRVISIKENGNIDSNFVITHLIKQILLENGKLCFVILHNTLGHYHNVGKRLGYDFLKQV 91

Query: 447 EAGVI 461
           + G I
Sbjct: 92  DEGGI 96


>UniRef50_Q6NP11 Cluster: LD12690p; n=4; Sophophora|Rep: LD12690p -
           Drosophila melanogaster (Fruit fly)
          Length = 291

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
 Frame = +3

Query: 285 VKEINGCDGSFIVNCVISYCIK-QNSPLLIVSSHNSITHYHNVGLRM--NHNLFKSCEAG 455
           + E +  D SF+++CV+   ++  N+  L+V   +   HY N G+R+  N N+F+    G
Sbjct: 62  ISEESNVDASFLISCVLGQRLRISNAGTLLVCLQHHYQHYFNAGMRLGYNTNIFQGKTLG 121

Query: 456 VID 464
           VID
Sbjct: 122 VID 124


>UniRef50_Q16LJ7 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 245

 Score = 39.1 bits (87), Expect = 0.10
 Identities = 15/66 (22%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
 Frame = +3

Query: 282 VVKEINGCDGSFIVNCVISYCIK--QNSPLLIVSSHNSITHYHNVGLRMNHNLFKSCEAG 455
           ++K+ +G DGSF++  ++ + +K  ++  +L++++H++  HY +  +++  NL  + ++G
Sbjct: 21  LLKQDSGVDGSFLIAAILGHRLKASKDHHVLLIATHHTYHHYSSACMKVGFNLGPARDSG 80

Query: 456 VIDYFD 473
            +   D
Sbjct: 81  QLQILD 86


>UniRef50_Q0PNE2 Cluster: UPF0405 protein TMEM103; n=26;
           Euteleostomi|Rep: UPF0405 protein TMEM103 - Homo sapiens
           (Human)
          Length = 266

 Score = 36.7 bits (81), Expect = 0.55
 Identities = 19/79 (24%), Positives = 40/79 (50%)
 Frame = +3

Query: 237 NIMSTIQKNISTNRIVVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGL 416
           N+++T        ++ +      DGSF+V+  +S+ +K N  +  V+   S +HY  VG 
Sbjct: 7   NLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYSIVGQ 66

Query: 417 RMNHNLFKSCEAGVIDYFD 473
           ++  +L  + E G + + +
Sbjct: 67  KLGVSLTMARERGQLVFLE 85


>UniRef50_UPI0000E49288 Cluster: PREDICTED: hypothetical protein;
           n=3; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 258

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = +3

Query: 282 VVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGLRMNHNLFKSCEAGVI 461
           +V E    DGSFI++  ++  +K +S ++ +    S +HY+    ++  NL  +  +G +
Sbjct: 22  LVTEACDSDGSFILHHFLTQYLKSSSKVVFLGLAQSFSHYNAAAQKLGVNLMAARTSGQL 81

Query: 462 DY 467
           D+
Sbjct: 82  DF 83


>UniRef50_Q38DM1 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 85

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -3

Query: 215 STC*FILFYSQMNYY*KILPT*TNIHFQFK*NTRCAIYLIRKLLLFNNMVLMTLYPKKLN 36
           +TC F  F +    +  ++ T T  H Q +  T   IYL   LL F+   L+  Y  +L 
Sbjct: 5   TTCFFFYFLASCTRFPPLMHTHTQAHIQMQARTYTYIYLFTYLLPFDGTFLLVFY-MRLQ 63

Query: 35  TLFLFLFP 12
            L   LFP
Sbjct: 64  RLTSCLFP 71


>UniRef50_Q5CT97 Cluster: Possible AAA domain containing protein;
           n=2; Cryptosporidium|Rep: Possible AAA domain containing
           protein - Cryptosporidium parvum Iowa II
          Length = 497

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
 Frame = +3

Query: 162 YFLIIIHLGIKKNKLAS*KQDV*HYNIMSTIQKNISTNRIVVKEINGCDGSFIVN----- 326
           ++  +I    K NK    ++D   ++ + T  + I  N+I+ K ++  +  F+ +     
Sbjct: 164 FYFQLIEENCKSNKTNFNQKDF-DFSKIKTRDEQIIINQIIKKSLSNLNIIFVNDLLDLL 222

Query: 327 CVISYCIKQNSPLLIVSSHNSITHYHNVGLRMNHNLFKSCEAGVIDYFDFGDATLTNIM 503
           C++   I  +S     S   +IT+  N+    NHN     +  VID  +F +A L++++
Sbjct: 223 CILKQMINNSSINYFNSDFKTITNT-NIDFDSNHNHNNKAKLLVIDSINFWNADLSSLI 280


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,421,893
Number of Sequences: 1657284
Number of extensions: 10597738
Number of successful extensions: 23438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23436
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)