Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1351
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.85 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   3.4  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    27   3.4  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   6.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.0  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -2

Query: 558  ISSIFFSTSMSN*SDSATPLYLLMLRHQNQNNLSPQPHNF*TDYGSFLNQHCGNELLSYV 379
            +S + F+  + +  D+ TP YL    H        +  NF + YG FL +   ++L   V
Sbjct: 878  LSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVSREANFLSLYGKFLEELKSSDLYKIV 937


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 326 LCYQLLY*AKQPSFDSILT*LNNSLPQCWFKNE 424
           LC QL+   + P FD++   +N  L  C  KN+
Sbjct: 16  LCSQLIENDRIPEFDNLYLDMNGILHNCTHKND 48


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 550 YFFQHIYEQLIRFSYSIIFVNVASPKSK*SITPASQLLNRL 428
           +F QH+ E L+ FSY++    +A P  K  +  A  L+  L
Sbjct: 299 FFAQHLSEGLMTFSYAMPSSALAKPAQKMVLDQADFLMKYL 339


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 252  IQKNISTNRIVVKEINGCD-GSFI---VNCVISYCIKQN-SPLLIVSSHNSITHYHNVGL 416
            ++KNI    + V   N  D G ++     C+ ++  K   +PL I     SITH+ ++ L
Sbjct: 1519 LEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSFSITHFPSLML 1578

Query: 417  RMNHNLFKS 443
             M+  +++S
Sbjct: 1579 AMSKPIYRS 1587


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +2

Query: 473  FW*RNINKYNGVAESDQLLIDVLKKIEEMQRNHDTVNII------FDGITHLLDLQYTLP 634
            FW  +   +      + +++   + I+ +++N D++N+I       DG  ++ DLQ  + 
Sbjct: 1467 FWKNSYFSFKSFKGRNYIVVGCQELIDAVEKNMDSLNLIKTSRHFKDGDMNITDLQSKMK 1526

Query: 635  EVNKFL 652
             + KFL
Sbjct: 1527 IIVKFL 1532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,835
Number of Sequences: 5004
Number of extensions: 49615
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)