Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1351
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0065 - 12527642-12528178,12531443-12531718                       29   3.5  
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213...    28   6.2  
01_01_0939 - 7404209-7404490,7405057-7405368,7405470-7405609,740...    28   6.2  
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546...    28   8.2  

>10_07_0065 - 12527642-12528178,12531443-12531718
          Length = 270

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 276 RIVVKEINGCDGSFIVNC-VISYCIKQNSPLLIVSSHNSITHYHNVGLRM 422
           RI++  + G  G F+V C V+S C+K  +     +      H+H   L M
Sbjct: 108 RIIIAAVAGA-GGFVVACGVLSRCVKAEAAAAAANGRRHHHHHHTTMLLM 156


>05_07_0076 -
           27520152-27520379,27520785-27521096,27521194-27521333,
           27521893-27521956,27522071-27522277,27522350-27522493,
           27522578-27522709,27522880-27524294,27524647-27524920,
           27526096-27526129,27527028-27527059
          Length = 993

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 396 HYHNVGLRMNHNLFKS 443
           HYH+ GLR+N NL++S
Sbjct: 817 HYHSGGLRLNPNLYES 832


>01_01_0939 -
           7404209-7404490,7405057-7405368,7405470-7405609,
           7406226-7406289,7406378-7406616,7406957-7406983,
           7407590-7407749
          Length = 407

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 396 HYHNVGLRMNHNLFKS 443
           HYH+ GLR+N NL++S
Sbjct: 213 HYHSGGLRLNPNLYES 228


>05_06_0057 +
           25253497-25253589,25253722-25253799,25254583-25254621,
           25254724-25255263,25255352-25255450,25255614-25255691,
           25255961-25256146,25256240-25256365
          Length = 412

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +3

Query: 321 VNCVISYCIKQNSPLLIVSSHNSITHYHNVGLRMNHN 431
           V+C   YC++   P  ++ S ++ +HY++  ++M+ +
Sbjct: 292 VSCRYKYCVQCLVPTAMMGSSHAASHYNSQSMQMDRS 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,955
Number of Sequences: 37544
Number of extensions: 246476
Number of successful extensions: 467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)