Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1351
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ787088-1|ABG79574.1|  266|Homo sapiens angiotonin transactivat...    37   0.080
BC014204-1|AAH14204.1|  268|Homo sapiens transmembrane protein 1...    37   0.080
BC000623-1|AAH00623.1|  268|Homo sapiens transmembrane protein 1...    37   0.080
AK000218-1|BAA91017.1|  250|Homo sapiens protein ( Homo sapiens ...    37   0.080
M33875-1|AAA59453.1| 1247|Homo sapiens interstitial retinol-bind...    31   5.2  
M22453-1|AAA36126.1| 1247|Homo sapiens protein ( Human interphot...    31   5.2  
J05253-1|AAC18875.1| 1246|Homo sapiens interstitial retinol-bind...    31   5.2  
J03912-1|AAA59188.1| 1246|Homo sapiens retinol-binding protein p...    31   5.2  
BC039844-1|AAH39844.1| 1247|Homo sapiens retinol binding protein...    31   5.2  
AL731561-8|CAH74045.1| 1247|Homo sapiens retinol binding protein...    31   5.2  

>DQ787088-1|ABG79574.1|  266|Homo sapiens angiotonin transactivated
           protein 1 protein.
          Length = 266

 Score = 36.7 bits (81), Expect = 0.080
 Identities = 19/79 (24%), Positives = 40/79 (50%)
 Frame = +3

Query: 237 NIMSTIQKNISTNRIVVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGL 416
           N+++T        ++ +      DGSF+V+  +S+ +K N  +  V+   S +HY  VG 
Sbjct: 7   NLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYSIVGQ 66

Query: 417 RMNHNLFKSCEAGVIDYFD 473
           ++  +L  + E G + + +
Sbjct: 67  KLGVSLTMARERGQLVFLE 85


>BC014204-1|AAH14204.1|  268|Homo sapiens transmembrane protein 103
           protein.
          Length = 268

 Score = 36.7 bits (81), Expect = 0.080
 Identities = 19/79 (24%), Positives = 40/79 (50%)
 Frame = +3

Query: 237 NIMSTIQKNISTNRIVVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGL 416
           N+++T        ++ +      DGSF+V+  +S+ +K N  +  V+   S +HY  VG 
Sbjct: 7   NLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYSIVGQ 66

Query: 417 RMNHNLFKSCEAGVIDYFD 473
           ++  +L  + E G + + +
Sbjct: 67  KLGVSLTMARERGQLVFLE 85


>BC000623-1|AAH00623.1|  268|Homo sapiens transmembrane protein 103
           protein.
          Length = 268

 Score = 36.7 bits (81), Expect = 0.080
 Identities = 19/79 (24%), Positives = 40/79 (50%)
 Frame = +3

Query: 237 NIMSTIQKNISTNRIVVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGL 416
           N+++T        ++ +      DGSF+V+  +S+ +K N  +  V+   S +HY  VG 
Sbjct: 7   NLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYSIVGQ 66

Query: 417 RMNHNLFKSCEAGVIDYFD 473
           ++  +L  + E G + + +
Sbjct: 67  KLGVSLTMARERGQLVFLE 85


>AK000218-1|BAA91017.1|  250|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20211 fis, clone COLF1807. ).
          Length = 250

 Score = 36.7 bits (81), Expect = 0.080
 Identities = 19/79 (24%), Positives = 40/79 (50%)
 Frame = +3

Query: 237 NIMSTIQKNISTNRIVVKEINGCDGSFIVNCVISYCIKQNSPLLIVSSHNSITHYHNVGL 416
           N+++T        ++ +      DGSF+V+  +S+ +K N  +  V+   S +HY  VG 
Sbjct: 7   NLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYSIVGQ 66

Query: 417 RMNHNLFKSCEAGVIDYFD 473
           ++  +L  + E G + + +
Sbjct: 67  KLGVSLTMARERGQLVFLE 85


>M33875-1|AAA59453.1| 1247|Homo sapiens interstitial retinol-binding
           protein 3 protein.
          Length = 1247

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 506 VAESDQLLIDVLKKIEEMQRNHDTVNIIFDGITHLLDLQYTLPEV 640
           V ++  L  + L K +E+   H ++  + +G  HLL+  Y  PEV
Sbjct: 612 VPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEV 656


>M22453-1|AAA36126.1| 1247|Homo sapiens protein ( Human
           interphotoreceptor retinoid-binding protein (IRBP) mRNA,
           complete cds. ).
          Length = 1247

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 506 VAESDQLLIDVLKKIEEMQRNHDTVNIIFDGITHLLDLQYTLPEV 640
           V ++  L  + L K +E+   H ++  + +G  HLL+  Y  PEV
Sbjct: 612 VPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEV 656


>J05253-1|AAC18875.1| 1246|Homo sapiens interstitial retinol-binding
           protein precursor protein.
          Length = 1246

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 506 VAESDQLLIDVLKKIEEMQRNHDTVNIIFDGITHLLDLQYTLPEV 640
           V ++  L  + L K +E+   H ++  + +G  HLL+  Y  PEV
Sbjct: 611 VPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEV 655


>J03912-1|AAA59188.1| 1246|Homo sapiens retinol-binding protein
           protein.
          Length = 1246

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 506 VAESDQLLIDVLKKIEEMQRNHDTVNIIFDGITHLLDLQYTLPEV 640
           V ++  L  + L K +E+   H ++  + +G  HLL+  Y  PEV
Sbjct: 611 VPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEV 655


>BC039844-1|AAH39844.1| 1247|Homo sapiens retinol binding protein 3,
           interstitial protein.
          Length = 1247

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 506 VAESDQLLIDVLKKIEEMQRNHDTVNIIFDGITHLLDLQYTLPEV 640
           V ++  L  + L K +E+   H ++  + +G  HLL+  Y  PEV
Sbjct: 612 VPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEV 656


>AL731561-8|CAH74045.1| 1247|Homo sapiens retinol binding protein 3,
           interstitial protein.
          Length = 1247

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 506 VAESDQLLIDVLKKIEEMQRNHDTVNIIFDGITHLLDLQYTLPEV 640
           V ++  L  + L K +E+   H ++  + +G  HLL+  Y  PEV
Sbjct: 612 VPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEV 656


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,709,909
Number of Sequences: 237096
Number of extensions: 1525358
Number of successful extensions: 2228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2228
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)