Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1351
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69659-4|CAA93487.2|  396|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL031634-1|CAA21034.1|  256|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z82286-4|CAB05310.1|  468|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z69659-4|CAA93487.2|  396|Caenorhabditis elegans Hypothetical
           protein F07C6.4a protein.
          Length = 396

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +2

Query: 221 GCLTL*HHVYNSEKYIYQQDCG*RNKWL*WFIHCQLCYQLLY*AKQPSFDSILT*LNNSL 400
           G LTL HHV      IY+  C    K   + IH QL    L    +  F+ +   ++  +
Sbjct: 89  GTLTLSHHVRFFVDTIYEVQCASTAKLFFFDIHNQLARHELLVTSEDYFELVAILVSVFV 148

Query: 401 PQC 409
           P C
Sbjct: 149 PDC 151


>AL031634-1|CAA21034.1|  256|Caenorhabditis elegans Hypothetical
           protein Y32B12C.1 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 464 LF*FW*RNINKYNGVAESDQLLIDVLKKIEEMQRNHDTVNIIFD 595
           LF ++ +NI    G  E D+      + +EE+QR HD +N+ F+
Sbjct: 78  LFCYYKKNIEDTRGRLEDDK------ETLEEIQRTHDELNVKFE 115


>Z82286-4|CAB05310.1|  468|Caenorhabditis elegans Hypothetical
           protein W02A2.7 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 482 RNIN-KYNGVAESDQLLIDVLKKIEEMQRNHDTVN 583
           RNI  +Y+ V E D+L ID + KI     N DT++
Sbjct: 204 RNIQFRYHRVMEHDELPIDEISKITLDNHNDDTMS 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,995,709
Number of Sequences: 27780
Number of extensions: 270879
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)