Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1351
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24610.1 68414.m03096 SET domain-containing protein low simil...    29   2.2  
At2g43290.1 68415.m05382 calmodulin-like protein (MSS3) identica...    29   3.9  
At4g37670.2 68417.m05327 GCN5-related N-acetyltransferase (GNAT)...    28   5.2  
At4g37670.1 68417.m05328 GCN5-related N-acetyltransferase (GNAT)...    28   5.2  
At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro...    28   6.8  
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro...    28   6.8  
At4g02235.1 68417.m00303 MADS-box family protein contains Pfam p...    27   9.0  
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si...    27   9.0  
At2g24300.2 68415.m02904 calmodulin-binding protein similar to c...    27   9.0  
At2g24300.1 68415.m02905 calmodulin-binding protein similar to c...    27   9.0  

>At1g24610.1 68414.m03096 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 476

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 273 NRIVVKEINGCDGSFIVNCVISYCIKQNSPLLI 371
           N  +++E NG D + +V  V    +K+N PLL+
Sbjct: 247 NARIIQEQNGADSNTLVKVVAETEVKENDPLLL 279


>At2g43290.1 68415.m05382 calmodulin-like protein (MSS3) identical
           to calmodulin-like MSS3 from GI:9965747 [Arabidopsis
           thaliana]
          Length = 215

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -3

Query: 101 LIRKLLLFN--NMVLMTLYPKKLNTLF 27
           ++R  LL+N  N  L++L PKKL TLF
Sbjct: 1   MVRIFLLYNILNSFLLSLVPKKLRTLF 27


>At4g37670.2 68417.m05327 GCN5-related N-acetyltransferase (GNAT)
           family protein / amino acid kinase family protein
           similar to SP|P08205 from Escherichia coli ; contains
           Pfam profile PF00696: Amino acid kinase family
          Length = 613

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 372 VSSHNSITHYHNVGLRMNH-NLFKSCEAGVIDYFDFG 479
           +  H   +  H++G+R++  N F +   GV+D  DFG
Sbjct: 196 IRRHGDRSRLHDIGVRVDTGNFFAAKRRGVVDGVDFG 232


>At4g37670.1 68417.m05328 GCN5-related N-acetyltransferase (GNAT)
           family protein / amino acid kinase family protein
           similar to SP|P08205 from Escherichia coli ; contains
           Pfam profile PF00696: Amino acid kinase family
          Length = 543

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 372 VSSHNSITHYHNVGLRMNH-NLFKSCEAGVIDYFDFG 479
           +  H   +  H++G+R++  N F +   GV+D  DFG
Sbjct: 196 IRRHGDRSRLHDIGVRVDTGNFFAAKRRGVVDGVDFG 232


>At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 907

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 390 ITHYHNVGLRMNHNLFKS 443
           + HYH+ G+R+N NL++S
Sbjct: 727 MVHYHSGGMRLNPNLYES 744


>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
           protein similar to ubiquitin-conjugating enzyme
           GB:3319990 from [Mus musculus]; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 1163

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 396 HYHNVGLRMNHNLFK 440
           HYH+ GLR+N NL+K
Sbjct: 672 HYHSGGLRINPNLYK 686


>At4g02235.1 68417.m00303 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); low similarity to
           APETALA3 homolog PcAP3 [Papaver californicum] GI:3170498
          Length = 196

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 513 SATPLYLLMLRHQNQNNLSPQPHN 442
           S TP YL  ++H N +N SP  +N
Sbjct: 104 SLTPSYLNQIQHLNPSNFSPYMYN 127


>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
           similar to ubiquitin-conjugating enzyme (GI:3319990)
           [Mus musculus]; similar to Baculoviral IAP
           repeat-containing protein 6 (Ubiquitin-conjugating
           BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
           sapiens];
          Length = 609

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 390 ITHYHNVGLRMNHNLF 437
           I HYH+ GLR+N NL+
Sbjct: 397 IVHYHSGGLRINPNLY 412


>At2g24300.2 68415.m02904 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 599

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 480 HQNQNNLSPQPHNF*TDYGSFLNQHCGNELL 388
           HQN    SP P     DY  F  QHC N+LL
Sbjct: 428 HQNAITYSPVPQPI--DYPQFAQQHC-NQLL 455


>At2g24300.1 68415.m02905 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 552

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 480 HQNQNNLSPQPHNF*TDYGSFLNQHCGNELL 388
           HQN    SP P     DY  F  QHC N+LL
Sbjct: 381 HQNAITYSPVPQPI--DYPQFAQQHC-NQLL 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,619,514
Number of Sequences: 28952
Number of extensions: 231596
Number of successful extensions: 466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)